Perognathus longimembris pacificus (Pacific pocket mouse): 125366753
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Entry
125366753 CDS
T08928
Symbol
Pms2
Name
(RefSeq) mismatch repair endonuclease PMS2 isoform X1
KO
K10858
DNA mismatch repair protein PMS2
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03430
Mismatch repair
plop03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
125366753 (Pms2)
03460 Fanconi anemia pathway
125366753 (Pms2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plop03400
]
125366753 (Pms2)
DNA repair and recombination proteins [BR:
plop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
125366753 (Pms2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
125366753
NCBI-ProteinID:
XP_048223407
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Position
1:68726471..68753051
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AA seq
879 aa
AA seq
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MQSRQSTTQPHTFPALLSRFIQCQKSQSTELAKAIKRIDRKSIHQICSGQVVLSLSTAVK
ELVENSVDAGATSIDLKLKEYGMDLIEVSDNGCGVEEENFEGLALKHHTSKIQEFADLTQ
VETFGFRGEALSSLCALSDVTISTCHTSAKVGTRLVFDHNGKIVQKTPYPRPKGTTVSLQ
HLFSTLPVRHKEFQRNIKKEYAKMVQVLQAYCIILAGIRVSCTNQLGQGRRQPVLCTSGA
CSIKENISSVFGQKQLQSLIPFVQLPPSDSACEEYGLSCSEALHNLFNISGFISRCTHGV
GRSTTDRQFFFINQRPCDPAKVSRLVNEVYHMYNRHQYPFVVLNISVDSECVDINVTPDK
RQILLQEEKLLLAVLKTSLVGMYDSDVTKLNVNQQALLSVEGNLIKRRGTEMDTPLQGRP
DSPPSSSTQGEDKSSMSVSRLREAFSLRHPAETKSPGPGTPELRWNFPVQKKGVPSSTSD
LASGRGLQGRLEEAVAPKDSGSHGDRAEMGKDLGYSSTSTAPEERLSPPEVGNSSGDHAG
SSPEDGFSQGDMDSGGNLSEPDLPPSVRESGKEKDGPYQWIPLPPQAESPSSNAKRFKKE
TPADANTPPKAANTQNVSAAQVDVAVTISKKIVPLSFSMSSLATRIKQLHCQRQQKEGKL
NYRKFKAKICPGENQAAEDELRREISKSMFADMEVLGQFNLGFIITKLKEDIFLVDQHAA
DEKYNFEMLQRHTVLQAQRLIAPQALNLTAVNEAVLIENLEIFRKNGFDFVINEDAPVTE
RAKLISLPTSKNWTFGPQDIDELIFMLSESPGVMCRPSRVRQMFASRACRKSVMIGTALN
TSEMKKVIAHMGEMDHPWNCPHGRPTMRHIANLNVISQN
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagtaggcaatctaccacacagccacatacattcccagccctgctctcccgtttt
attcaatgtcaaaagtcgcaaagtacagagcttgcaaaggcgatcaaacgtatcgatagg
aaatcaatccatcagatttgttctgggcaagtggtcctgagtctaagcactgctgtgaag
gagttggttgaaaatagtgtggatgctggtgccactagtattgatctcaagcttaaagaa
tatgggatggatctcattgaagtttcagacaatggatgtggggtagaagaagaaaatttt
gaaggcttagctctgaaacatcacacttctaagattcaagagtttgctgacctcacccag
gttgaaacgtttggctttcggggggaagctctgagctcactctgtgcgctgagtgatgta
actatttctacctgccacacatctgcaaaagtggggacccgactggtatttgatcacaat
gggaaaattgtccagaaaaccccctacccgcggcctaaggggaccacagtcagcctgcag
catttgttctctacactccctgtgcgccacaaggaattccaaaggaatattaaaaaggag
tatgccaaaatggtccaggtattgcaagcctactgcatcatcttagcaggcatccgagtg
agttgcaccaatcagcttggacaaggaagacggcagcctgtgctttgcaccagcggagcg
tgcagcatcaaggagaacatcagctctgtgtttgggcagaagcagctgcaaagcctcatt
cctttcgttcagctgccccctagtgactctgcctgtgaagaatatggcctgagctgttct
gaggcgctgcacaatctgtttaatatctctggcttcatctcacgctgcacgcacggtgtc
gggaggagcaccaccgacaggcagttcttcttcatcaatcagcggccttgtgacccagca
aaggtatccagacttgtgaacgaggtctaccacatgtacaatcgccatcagtatccattc
gttgttcttaacatttctgttgactcagagtgtgtggatatcaatgtgactccagataaa
aggcagattttgctacaagaggagaagcttttgctggcagtgttaaagacttcacttgta
ggaatgtacgacagcgatgtgaccaaactcaatgtcaaccaacaggcactgctgagtgtt
gaaggtaacttgataaagcggcgtgggacagaaatggatacccctctgcagggaaggcca
gacagtcccccttcatccagcactcagggagaagacaaaagctccatgtctgtttccagg
ctgagagaggccttttctcttcgtcaccctgcagagaccaaatctccaggcccagggact
cctgaactgagatggaatttcccagtacagaaaaagggggtaccatccagcacctctgat
cttgcctctggcagaggcctgcagggccgtctggaagaggcagtggctcccaaggactcg
ggttcccatggggacagagcggaaatggggaaagacttggggtatagcagtacatccact
gccccagaggaaaggctcagccccccagaagtgggcaacagcagcggtgaccatgcagga
agttccccagaagatgggttttcacagggagacatggactctggtggtaatttatctgaa
ccagacctccccccttcagtcagggagtcggggaaggaaaaagatggcccatatcaatgg
atacctctgcctcctcaggcagaatccccctcgtccaatgctaagcgatttaaaaaggaa
acgcctgcagatgccaacactcctccaaaggcagctaacactcagaacgtgtcagcagcc
caagttgatgtggccgtgacaattagtaagaaaatagtgcccctttccttctctatgagc
tctttagctacacgaataaaacagttgcattgccaaagacagcagaaggaaggcaaattg
aattataggaaattcaaggcaaagatctgcccaggagaaaaccaagcagcagaagatgaa
ctgagaagagagataagtaaatcaatgttcgcagacatggaggtgcttggtcagtttaac
ttggggttcataataaccaagctgaaggaggacatcttcctggtggaccagcacgcggct
gatgagaagtacaactttgagatgctgcagcggcacacagtgctccaggcacagagactc
atcgcacctcaggctctcaacttaactgctgtcaacgaagctgtcctgatagaaaatctg
gaaatattcagaaagaatggctttgactttgtcattaatgaagatgctccagtcacggaa
agagctaaacttatttccttgccaactagtaagaactggacttttggaccccaggatata
gatgagctcattttcatgctaagtgagagcccgggggtcatgtgccggccctcccgagtc
aggcagatgtttgcctccagagcctgtcggaagtctgtgatgattgggacggctcttaac
accagcgagatgaagaaggtcatcgcccacatgggtgagatggaccacccctggaattgc
ccccacggaaggccaaccatgaggcacattgccaatctgaatgtcatttctcaaaattga
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