Perognathus longimembris pacificus (Pacific pocket mouse): 125367010
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Entry
125367010 CDS
T08928
Symbol
Smurf1
Name
(RefSeq) E3 ubiquitin-protein ligase SMURF1 isoform X1
KO
K04678
E3 ubiquitin ligase SMURF1/2 [EC:
2.3.2.26
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04120
Ubiquitin mediated proteolysis
plop04137
Mitophagy - animal
plop04144
Endocytosis
plop04340
Hedgehog signaling pathway
plop04350
TGF-beta signaling pathway
plop04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
125367010 (Smurf1)
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
125367010 (Smurf1)
04350 TGF-beta signaling pathway
125367010 (Smurf1)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
125367010 (Smurf1)
04137 Mitophagy - animal
125367010 (Smurf1)
09144 Cellular community - eukaryotes
04520 Adherens junction
125367010 (Smurf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
plop04131
]
125367010 (Smurf1)
04121 Ubiquitin system [BR:
plop04121
]
125367010 (Smurf1)
03029 Mitochondrial biogenesis [BR:
plop03029
]
125367010 (Smurf1)
Enzymes [BR:
plop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
125367010 (Smurf1)
Membrane trafficking [BR:
plop04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
125367010 (Smurf1)
Autophagy
Mitophagy
Other mitophagy associated proteins
125367010 (Smurf1)
Ubiquitin system [BR:
plop04121
]
Ubiquitin ligases (E3)
HECT type E3
125367010 (Smurf1)
Mitochondrial biogenesis [BR:
plop03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
125367010 (Smurf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WW
C2
Motif
Other DBs
NCBI-GeneID:
125367010
NCBI-ProteinID:
XP_048223617
LinkDB
All DBs
Position
1:complement(69382572..69456522)
Genome browser
AA seq
731 aa
AA seq
DB search
MSNPGTRRNGSSIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDP
KWSQHYDLYVGKTDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCK
LNPSDSDAVRGQIVVSLQTRDRIGTGGSVVDCRGLLENEGTVYEDLGPGRPLSGLMEEPA
PYTDGTGAAAGGGNCRFAESPSQDQRLQMQRLRNPEVRGSLQTPQNRPHGHQSPDLPEGY
EQRTTVQGQVYFLHTQTGVSTWHDPRIPRDLNSVNCDELGPLPPGWEVRSTVSGRIYFVD
HNNRTTQFTDPRLHHIMSHQCQLKEPSQPPPLPSEGSLEEEELPAQRYERDLVQKLKALR
HELSLQQPQAGHCRIEVSREEIFEESYRQIMKMRPKDLKKRLMVKFRGEEGLDYGGVARE
WLYLLCHEMLNPYYGLFQYSTDNIYMLQINPDSAINPDHLSYFHFVGRIMGLAVFHGHHI
NGGFTVPFYKQLLGKPIQLSDLESVDPELHKSLVWILENDITPVLDHTFCVEHNAFGRIL
QHELKPNGRNVPVTEDNKKEYVRLYVNWRFMRGIEAQFLALHKGFNELIPQHLLKPFDQK
ELELIIGGLDTIDVNDWKSNTRLKHCAADSSVVRWFWQAVETFDEERRARLLQFVTGSTR
VPLQGFKALQGSTGAAGPRLFTIHLIDANTDNLPKAHTCFNRIDIPPYESFEKLYEKLLT
AVEETCGFAVE
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaccccgggacgcgcaggaacggctccagcatcaagatccgcctgacagtattg
tgtgccaagaaccttgcaaagaaagactttttcagactccctgaccccttcgctaagatt
gtcgtggatggctctgggcagtgccactcgaccgacactgtgaaaaacacattggaccca
aagtggagccagcactacgacctatacgttgggaaaacggattctataaccatcagcgtg
tggaaccacaagaagattcacaagaagcagggagcaggcttcctgggctgtgtgaggctg
ctttccaacgccatcagcagattgaaagacactggctaccagcgtttggatctgtgcaaa
ctaaatccctcggattctgatgcagtccgtggccaaatagtggtcagtttacagacgcga
gaccgaataggcaccggagggtcggtggtggactgcaggggattgctagaaaatgaagga
accgtgtatgaagacttggggcctggaaggccgctgagcggcctcatggaggagccggcc
ccgtacacggatggcactggagcggcggcgggcggcgggaactgcaggtttgcggaatcc
ccgagtcaagatcagagactgcagatgcagcggctgcggaatcccgaggtgcgcgggtca
ctgcagacaccccagaaccgaccgcacggccaccagtcaccagatctgccagaaggctac
gaacagagaacaacggttcagggccaagtgtacttcttacacacgcagactggagtcagc
acgtggcacgaccccagaataccaagagaccttaacagtgtgaactgtgatgagcttgga
ccgctgccgccaggctgggaagtccggagcactgtgtcggggagaatatactttgtagat
cataataaccgcacgactcagtttacagacccccggctgcaccacatcatgagccaccag
tgccagctgaaggagcccagccagccgccgccgttgcccagcgagggctccctggaggag
gaggagctgccagcacagcgctacgagcgcgacctggtgcagaagctgaaggcgctgcgc
cacgagctgtcgctgcagcagccccaggccggacactgccgcattgaggtctcccgcgag
gagatattcgaggagtcttaccggcagatcatgaagatgcggcccaaagacctgaagaag
cggcttatggtgaagttccgcggggaggagggcttggactacggtggcgtggccagggag
tggctgtacttgctatgccatgaaatgctgaacccctactacggcctcttccagtactcc
acagacaacatctacatgctgcagatcaaccccgattccgccatcaacccggaccacctg
tcttatttccacttcgtggggcggatcatggggctggcggtgttccatgggcaccacatc
aacggtggcttcacagtgcccttctacaagcagctgctgggcaagcccatccagctgtct
gacctcgagtctgtggacccggagctgcacaagagcctggtgtggatcctggagaatgat
atcacgccagtgctggaccacacattctgcgtggagcacaacgccttcgggcgcatcctc
cagcacgagctgaagcccaacggcaggaacgtgccggtcacagaggacaacaagaaggag
tacgtgcggctgtacgtgaactggaggttcatgagaggcatcgaggcgcagttcctggcg
ctgcacaagggcttcaatgagctcatcccgcaacacctcctgaagccctttgaccagaag
gagctagagctgataataggtgggctggacactatcgacgtgaacgactggaagtccaac
acacggctgaagcactgcgcagccgacagcagcgtggtccgctggttctggcaggcggtg
gagaccttcgacgaggagcggagggcccggctcctgcagttcgtgacgggctccacgcgg
gtccccctgcaaggcttcaaggctctgcaaggctctacaggcgcggcagggccccggctc
ttcaccatccacctcatcgacgccaacaccgacaacctgcccaaggcccacacctgcttc
aaccgcatcgacatcccaccgtatgagtcgttcgagaagctctacgagaagctgctgacg
gctgtggaggagacgtgcggctttgccgtggagtga
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