Perognathus longimembris pacificus (Pacific pocket mouse): 125367237
Help
Entry
125367237 CDS
T08928
Symbol
Taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125367237 (Taf5l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plop03021
]
125367237 (Taf5l)
03036 Chromosome and associated proteins [BR:
plop03036
]
125367237 (Taf5l)
Transcription machinery [BR:
plop03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
125367237 (Taf5l)
Coactivators
SAGA/TFTC/STAGA complex
125367237 (Taf5l)
Chromosome and associated proteins [BR:
plop03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
125367237 (Taf5l)
STAGA complex
125367237 (Taf5l)
TFTC complex
125367237 (Taf5l)
SAGA complex
125367237 (Taf5l)
SLIK complex
125367237 (Taf5l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
TFIID_NTD2
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_EML
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_RIG_2nd
RMC1_N
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_EIPR1
PEP5_VPS11_N
PROPPIN
Beta-prop_IP5PC_F
Ge1_WD40
WD_LRWD1
Nbas_N
Beta-prop_DCAF12
Mala_s_1-like
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
125367237
NCBI-ProteinID:
XP_048223800
LinkDB
All DBs
Position
18:complement(298899..324407)
Genome browser
AA seq
589 aa
AA seq
DB search
MKRVRTEQVQVAVSCYLKRRQYVDSDGPLKQGLRLSQTAEEMAANLTVQSESGCANVVSA
APCQAEPQQYEIQFGRLRSFLTDSDSQHSHEVMPLLYPLFVYLHFNLVQSGPKSTIESFY
SRFHGMFLQNASQKDVIEQLQTTQTFQDILSNFKLRAFLDNKYVVRLQEDSYNYLIRYLQ
SDNNTALCKVLTVHIHLDVQPAKRTDYQLYASGSSSRNESSGLEPPEVPSPILQNEAALE
VLQESIKRVKDGPPSLTTICFYAFYNTEQLLNTAEISPDSKLLAAGFDSSCIKLWSLQSK
KLKSEPHRVDTSRIRLACDTLEEEEDEDDSVGTEMKILRGHCGPVYSTRFLADSSGLLSC
SEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPYSLYFASGSHDRTARLWSFDRTYPLR
IYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNG
KYLASAGEDQRLKLWDLASGTLFKELRGHTDSITSLAFSPDSGLVASASMDNSVRVWDIR
NTCCSAPADGSSSELVGVYTGQMSNVLSVQFMACNLLLVTGITQENQEH
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgggtgcgtacggagcaagtccaggtggcagtgtcctgctacctcaaacgccgg
cagtacgtggactcagacggtcccctgaagcaaggtctgcgcctctcacagactgctgag
gagatggctgccaacctcacagtccagtcagaatctggttgtgccaatgtggtatctgca
gccccatgtcaggcagaaccccagcaatatgaaatacagtttggacgattgcggagtttt
ctcacggattctgactcccagcacagccatgaagtgatgcctctcctctaccccctcttt
gtctacctccatttcaacctggtccagagcggcccaaagagcaccattgaaagcttctac
agccgcttccatgggatgttcctgcagaacgcaagccagaaggatgttatcgagcagctg
cagaccacgcagaccttccaggacatcctgtccaacttcaagctccgagcattcctagac
aacaagtacgtggtccgtctccaagaagacagctacaactacctgatccgctacctccag
agtgacaacaacactgccctgtgcaaagtcctcactgtgcacattcacctggatgtgcag
cctgccaagaggacagactaccagctctatgccagtggcagctcctcccgcaacgagagc
agtggcctggagcccccagaggtgcccagccctattctgcagaacgaggctgccttggag
gtcttacaggagagcatcaagcgtgtcaaggatgggcctccctctctcactaccatctgc
ttctatgccttctataacacagaacagctgctgaatacagcagaaatctctcctgatagc
aagctgcttgcagctggttttgacagctcctgcatcaagctatggagcttgcagtccaag
aaattgaagtcagagccccaccgtgtagacacctcccgtatccgcctggcctgtgacact
ctggaggaagaggaggatgaggatgatagcgtgggcacagagatgaagatactgcggggt
cattgtggaccagtgtacagcacacggttcctcgcagacagctctgggttgctatcttgc
tctgaagacatgtccatcagatattgggacctcggtagtttcaccaacactgtgctgtac
caaggacacgcctaccctgtgtgggacctggacataagcccatacagcctgtacttcgcc
agcggctcccatgaccgaaccgccaggctgtggtcctttgatcggacgtacccgctgagg
atatatgcagggcacctggcagatgtggactgtgtcaaattccaccctaactcaaactac
ttagccacaggctcaactgacaagactgtccggctgtggagtgcccagcaggggaactca
gtgcggctcttcacaggacaccgtggccctgtgctctcccttgccttttcccccaatggt
aagtatttagcctctgcaggtgaggaccagcggttgaagctgtgggacctagcctctggg
accctttttaaagaattgagaggccacacggacagcatcaccagcctggccttcagccca
gacagcggcctggtcgcctctgcctccatggacaactctgtacgtgtctgggacatcagg
aacacctgctgcagtgcccccgctgatggctcctctagcgagcttgtgggtgtgtacaca
gggcagatgagcaatgtcctgagtgtgcagttcatggcctgcaacctacttctggtgact
ggaatcacacaagaaaatcaagaacattga
DBGET
integrated database retrieval system
