Perognathus longimembris pacificus (Pacific pocket mouse): 125367430
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Entry
125367430 CDS
T08928
Symbol
Cspg4
Name
(RefSeq) chondroitin sulfate proteoglycan 4 isoform X1
KO
K08115
chondroitin sulfate proteoglycan 4
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
plop00535
]
125367430 (Cspg4)
04091 Lectins [BR:
plop04091
]
125367430 (Cspg4)
Proteoglycans [BR:
plop00535
]
Cell surface proteoglycans
Others
125367430 (Cspg4)
Lectins [BR:
plop04091
]
C-Type lectins
Others
125367430 (Cspg4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Laminin_G_2
Laminin_G_1
Cadherin_4
DUF5527
DAP10
DUF7378
Motif
Other DBs
NCBI-GeneID:
125367430
NCBI-ProteinID:
XP_048224049
LinkDB
All DBs
Position
19:complement(32199986..32278686)
Genome browser
AA seq
2389 aa
AA seq
DB search
MGRLRARGLVLLASCLVLCGARGALEASFYGESYVELHMVEVSSELSLQLKFQTSKPQGL
LFLAAGKNDYCIIEVVSGTVQVRVNWDTGAQAVLSEQRLHVDDLGWHLLELYCVKDNISL
VIDKYYETTGKTVSGMQNFNFHHGIYVGGRGGLHVHYLDGNLPNFRGCMQDVVLNKREIL
RSLRSYPGFKKIHEVSLGCSDEFFAGEDEAVNFFSSRSYVVFPEWKVHGEGLLGFALQTG
TQQALLLFQPGREGSFVALEIYEGRLQAHVGRSDNKSQLSSFSLVSDNEWHVIQLKFMGR
YLHLLVDQQGVRVLLPSQSIPFVSQGPLFVGGLHDQMWGQVKRLELASVKSARGISLKGC
LRGLKANSEKRALRDALVSKDISTGCKAKGINNANPSWTTATSLPPSELSYSTSVTQTIK
PFLPEESSYSLVLNNLEVQEGGRALLEEKHMKVNVELNDLNINDSQILFKIEDMPTHGFL
QLDVSPQQDMEKVFTILDLWQGKVWYVHDGSEDPIDYFTFLVYSSTKNEIPLYHPGSVPH
VFNITVIPVNDPPHLKLPEGNLFLLFENSKKQLTPNIIQVADPDTDSLSLSFSVLGNFNS
EAGYLENASDPGKIILGFTYVDLRDGHVFYVHRGHQNARIVLRASDGELVSNTAVLRVMA
VPWDFEVAHRTGVAVLQGGTVLITQGNLSVEVNGEQHEMETHYVITRSPQFGQIECKGLD
GEWKQVNTFSQRSIDQSRVQYHSTFKELQQENITDHFKFKVHVEGKMSKELIFPVTIKWL
KFTLLKNVPLEIRNTHKQVLNAEHLQAATEGVEVAESELHFKLLAPPRRGKLLLGRKVLK
RNSIFSQKYIIDSKISYEPKDSSREDSQDTFRFLILAEHIESKEYTFRINFKANKTHITL
TNKKLFVKEGERKLITKSDLFTPTWGNQIFHYQVTKNPQHGRLTLMNFSESLDSLDNITA
FTDQDILGGKLMYIHDDSETQWDEFFVVASAKGPGQESMAGDLDSEPLSTEIKVSISVEM
KNDERPVRVVDKVFHVVRGSQRLLTLADLCYHDPDVDFDDGSLLYIRRGIPNGDLVRASH
PMQKLFQFRQEDLQEGRVLFRHQGADSARFVLFVTDGIHYTPSFLEVRVSDPYVHIANNT
GLLVQRGKASYLTTANLSVTTNQDVRTDLEVVFHIMVPPNHGRVLVNDSVSYSFSQHDLK
QRGVMYKHDGGGNFDMFNLSVRVKDIDLEVGVSIQVSLEGHQYPAQTLHSKTFVVEEGNS
VKLSLQAGNKDNLPSELVFTVRTPPMYGYLKKFTQEGNSMGRDVNLLWSFTQQDMDDGSI
LYVQTSPDQQQDRLFLDVTAGPHVLSKVEILFHIVPKWIPLEVQNFTVPEGGSRALLKDY
LRIPSQYFETCEFVLLEPPRHGYVESSTFPRVKLMKFTKKQVEKELIYYVHDDSEELQDN
FTIFANSSALGKQSAPQTIFVTVESVNDETPVITTNKVLQVWVNSVTEMTRGDLCAEDED
SSPQDLLYCVTPPSNGHLALKSLPSQSIQNFTQAQINEGQLVFVHAGAMSGGFSFQVTDG
LNSAPRQIFSITARALILSLEINRGLSIFPGSTKPFSSRDLKAVTNDESTGNRTITFTVV
SSPRLGKLLRMNADKSTEDVSIFTQYLVDEGLILYQHTDHENTGWTVEDSFTFTTSSPPA
VLGPEEFHITISYEMNESGWQSRLFANTGAAVKEGDKVLIDQSKLDASNLLFQLPELQRS
SYEIWYQVTSLPHHGTIMIGNRNITKGKPNFSQYIINKFGILYLHDDSESLTDNFTFAVW
PNQKSKSTTKPEADCLEEMFNITVIPVNDQAPELKTKGLRLEVLQGSRLVVGPEILKVED
LDSPPNEIRYTIIRNPNNGFLAMAYHLDMPVHHFTQADIDNSQVWFIQDGRPCSGMFYFS
VTDGEHHPLYKLFHLDVIPISITLVNRTDLRLPQGQTTIPITNAHLSAVTNGKSSQIIYR
MTWPLQHGWLLIENQEVTNFGQEDLDLGRLFYHMTNLTASEDQLQFSLFTLESNLTGQTL
GIRVQPLLRVTSNLKIVNKVAHQLRRWDLNATELANLTNSDPTFEVTEPPVHGRLRRRAA
HGKMEEDATLFTQKDIDQGLLVLESYANLTGTEVLNDSFTFLLRANYVQPAKGYLPFSIV
PPDPLLLQSFTPDVPLLFTGDNLVTSVFIQKQPVVSSESMTQTETIGTLTQTKWQGADPW
GQHHGKEPSVNEKVSPTRILWLPAATQVNPGVSTQPTDSSYPLMVIIPLTAVLLLLIVTV
VAFCVWLLGRKEKAKPLLEPQLNLEPTIPRCRPERSVSIPTVTVTPVLRSPSSLPAILFR
VPECEPMAYPAAEPMKTCAPWESWANLHPDMAKLCRQTNPTLKHNQYWV
NT seq
7170 nt
NT seq
+upstream
nt +downstream
nt
atggggcggctccgagcccgcggcctggtcctgctcgcctcctgtctggtgctctgcggg
gcgcgcggggcgctcgaagcatctttttatggtgaaagctatgtggagctccacatggta
gaagtttcctctgagctatctcttcaattaaaatttcaaaccagcaagccacaagggtta
cttttcttagcagctgggaaaaatgactattgcataatagaagttgtatcaggaactgta
caggtgagagtgaattgggatactggtgcacaagcagtcctttctgagcaaaggcttcat
gtggatgacttgggttggcatttgctagaactgtactgtgttaaggataatatttccttg
gttattgacaaatattatgagaccactggcaaaacagtcagtgggatgcagaatttcaac
tttcaccatggaatctatgttggaggccgagggggactccatgtccattacctagatgga
aatctacctaacttccgtggatgtatgcaggatgtggtgttgaacaagagggagatcctg
aggtcccttagatcttaccctggttttaagaagatccatgaggtttccctgggatgcagt
gatgagttttttgctggtgaggatgaggctgtcaatttctttagctctaggtcctatgtc
gtctttccagaatggaaggtccatggagaagggctgttaggatttgctttgcaaactgga
actcagcaagctttacttttatttcagccaggtagagaaggaagttttgttgccttggaa
atatatgaaggtcggttgcaagctcacgtaggaaggagtgacaataaatctcagctttct
tcttttagcttagttagtgacaacgagtggcatgttattcaactgaagttcatgggaagg
tatctgcacctcctggtggatcaacaaggggtaagggtgttgctgccttcacaaagcata
ccgtttgtatctcaaggccccctgtttgtaggaggtctacatgaccaaatgtgggggcag
gtgaagagattagaacttgcctctgtgaagtctgctcgtggaatctctttgaaagggtgc
ttaagaggcttgaaagccaattccgaaaagagagcattaagggatgctcttgtttccaaa
gacatttctactggatgcaaagctaagggtatcaataatgcaaatccttcttggacaaca
gcaacaagcctgcctccctcagaattatcctattccacttcagtcacccaaaccatcaag
ccttttcttccagaagaaagtagctacagtttggttttgaataacttggaagtacaagaa
ggtggacgagccttactagaagaaaagcatatgaaggtgaatgtggaacttaatgatctg
aatatcaatgattctcaaatactatttaaaatagaggacatgcctactcatgggttcctt
caattagatgtttcgcctcagcaagacatggaaaaagttttcactattttggatttgtgg
caagggaaagtgtggtatgtacacgatggttctgaagatcctatagattatttcacattt
ttggtctattccagcaccaagaacgaaataccattatatcatccgggtagtgttccacat
gtgtttaacattactgtcattccagtgaatgaccccccgcatcttaaactcccagaagga
aacttgtttctcctgtttgagaactctaaaaagcaactgaccccaaatataatccaggtg
gcagacccggatactgattctttgagtcttagtttctcagtccttggcaacttcaattca
gaggctgggtatttagaaaatgccagtgatcctgggaaaatcattcttggatttacctat
gtggatttaagagatggccatgttttctatgtgcacaggggtcatcagaatgcgcggatt
gttctgagagccagtgatggtgagctggttagcaatactgcagtattacgagtcatggct
gttccttgggactttgaagtggcccacagaactggtgtggctgttctacagggtggcact
gttctgattacccaaggtaacttgtctgtggaggtcaatggtgagcaacatgagatggag
acccattatgttattactcgttcacctcaatttggccagattgaatgtaaaggcttagat
ggagaatggaaacaagttaataccttttctcagcgttccattgaccagagtcgagtccaa
tatcatagtacattcaaagaactgcagcaagaaaacattacagatcactttaagtttaaa
gttcatgtagaagggaaaatgagcaaagagctcatatttcctgtgaccataaaatggcta
aagttcacactgctgaagaatgtacctctagaaatcaggaacacacacaaacaagtatta
aatgctgaacatttgcaggctgcaaccgaaggtgtggaagtagctgagagcgaactacat
tttaagttgctggccccacctaggagaggaaaattgctacttggcaggaaagttcttaaa
agaaactcaatcttcagccagaaatatattatagactctaaaataagttatgaacctaaa
gatagttcaagagaagattcacaggacacttttaggtttttgattcttgcagaacacata
gaatcaaaagagtatacttttaggataaatttcaaggcaaataagacacatattacttta
acaaacaaaaaactatttgtaaaagagggagaaagaaagctaattacaaaatcagactta
tttactccaacctggggcaatcagattttccactatcaagtcaccaagaatcctcaacat
ggaaggctgacattgatgaacttttcagagtctctggacagtcttgacaatattactgca
ttcacagatcaagacatcttgggtgggaagctcatgtatattcatgatgattctgagacc
cagtgggatgaattctttgttgtggcctctgccaaaggtccaggccaggagagcatggct
ggggatcttgactcagagcctttgtctacagaaatcaaagtgagcatttctgttgagatg
aagaatgatgagaggccagtgcgtgtggtggataaggtgtttcatgttgtgcggggcagc
cagcgcttactgaccttggctgatctctgttaccatgatcctgatgtagatttcgatgat
ggatcgctgctgtacatccgacgaggcatccccaatggggacttggtccgagccagccac
cccatgcagaagctcttccagttcaggcaggaggacctgcaggaagggcgtgtgctcttc
agacaccaaggtgccgactctgcccgctttgtgctgtttgtgacagatggcatccattac
acaccttcctttcttgaggtcagggtgtcagacccctacgtccacatagccaacaacaca
gggcttctggtgcagagaggaaaagccagttacctcaccacagcaaacctgagtgtcacc
acaaaccaagatgttcgaacagatctggaggtagtgtttcacatcatggtgcctccaaac
catggcagagtccttgtcaatgattctgtatcctactcattttcccaacacgacttgaag
cagagaggtgtgatgtataagcatgatggcggtggcaactttgacatgttcaacctgtcg
gtgagggttaaagatatagacttagaagtgggggtctccattcaagtgtctttggaaggc
catcagtatcctgctcagactctgcacagcaagacctttgtagttgaagaaggaaattct
gtcaaattgagcctccaggctgggaacaaagacaatcttccttcagagctagtgttcaca
gtcagaactccacccatgtatggatatctgaagaaatttacacaagaaggcaacagcatg
ggtagggatgtgaatctcctttggagttttacacaacaggacatggatgatggcagtatc
ctttatgtacagacgtctcctgaccaacaacaggatcgtctcttcctggatgtgactgct
ggtccccatgtgttaagtaaagtagaaatcctgttccacatcgtccccaagtggattccc
ctggaggtacagaacttcacagttccagaaggtggctccagggcccttctgaaagactac
ctcagaattccaagccagtactttgagacatgtgaatttgttctacttgaaccacctaga
catggatatgttgaaagttcaactttcccaagagtgaagttaatgaaatttaccaagaaa
caggtggaaaaagaattgatttattatgttcatgatgacagcgaagagcttcaggacaat
tttaccatctttgcaaatagctcagcacttgggaaacagagtgctccccaaactattttt
gtgaccgttgaatctgtaaatgatgaaactccagtaataacaacgaataaggtcctccag
gtgtgggtgaattctgtcacagagatgaccagaggtgacctgtgtgcagaagatgaggac
tcctccccgcaggacctgctctactgcgtcactccacccagtaatgggcatctggctctc
aagtctcttcccagccaaagcatccagaactttacccaggcacaaatcaacgagggccaa
ctagtgtttgtacatgccggagcaatgtcaggaggttttagttttcaggttaccgacgga
ttgaacagtgcgcctcgacaaatctttagcatcacagctcgtgctctgatccttagctta
gaaataaacagaggtctgagcatctttccaggatccacaaagcccttttcatctcgtgac
ctgaaagctgtgaccaatgatgagagtacaggaaacagaactataacgtttacagttgta
agttcccctagacttgggaagttgctgagaatgaacgctgacaagagcactgaggatgtt
tccatttttacccaatatctggtcgatgaagggctaatattataccagcacacggatcat
gagaatactggttggactgtggaagattcattcacattcacaacatcctcccccccagca
gttctgggccctgaagaattccatattaccatttcatatgaaatgaatgagtctggctgg
cagagtcgtctgtttgcaaatacaggagctgctgtcaaggagggagacaaagttctgatt
gaccagtctaagttagatgcttccaaccttttatttcaattacctgaacttcagcgctct
tcctatgaaatctggtaccaggttacatcccttcctcaccacggaaccattatgattgga
aacagaaatatcaccaaaggaaaacccaatttctcccagtatataattaacaaatttggg
atcttataccttcatgatgactctgaatccttgactgataattttacctttgctgtttgg
ccaaaccaaaagagcaaatccaccaccaagccagaggctgactgtcttgaagagatgttt
aacatcaccgttattcctgtgaatgaccaggcaccagaattaaagacaaaagggcttcgg
ttggaagttctgcagggcagtaggttggttgtgggacctgaaatcttgaaagtggaagat
ctggacagtcctccaaatgaaatcaggtatacgatcatccgtaatcctaataatggcttt
ttggcaatggcttaccacctggacatgcctgttcaccactttacacaagctgacattgat
aactctcaggtgtggttcatacaagatgggcgaccatgttctgggatgttctactttagt
gtgactgatggtgaacaccaccctctctacaagctcttccatctggatgtcattcccatc
tccatcacccttgtgaaccgcacagatctacgtctcccacaaggccagacaactattccc
atcaccaatgctcacctgtcagcagtgaccaatggaaagagctctcagatcatctacaga
atgacatggccgctccaacatgggtggctgctaattgaaaaccaggaggtcaccaatttt
ggacaagaggatttggatttgggaagactcttttaccatatgacaaatctcacggcctca
gaggaccagctacagttctcactgtttacactagaaagcaacctgacaggacaaacactg
ggcatcagagtccagcctctactacgggttacatcaaacctaaaaattgtcaacaaagta
gcccatcagctgaggaggtgggacctcaatgcaactgaacttgctaatctgactaatagt
gaccccacatttgaagtgacagaaccccctgtgcatggaagacttaggcgaagagcagct
cacggcaagatggaggaagatgctactctgttcactcagaaagacattgaccaggggctg
ttggtgctggaatcatatgctaatctaacaggcactgaggtgctaaatgactcctttact
ttcttgctcagggccaactatgtacaaccagcaaaaggttatctccccttctccattgtg
ccacctgatcccttacttttgcaaagctttacaccagatgttcctttattattcactgga
gataaccttgtgacctcagttttcattcagaaacagcctgtggtttcttcagaatccatg
acacagacagaaactatagggactctgacccagaccaaatggcaaggagcagatccctgg
gggcagcaccatggcaaagagccaagtgtgaatgagaaggtctcccccaccagaatcctt
tggttaccagctgccacccaagtcaaccctggggtatccactcagcccacagacagcagt
taccccttgatggtcatcatacccctgactgctgtgctcctcctgctaatagtgactgtc
gtggccttttgtgtctggctgctaggccggaaggagaaggcaaaacccctacttgagccc
cagctcaacctagaacctacaatccctcgttgcagaccagaaaggagtgtaagcattccc
actgtcacagtgacacccgttctaagaagccccagcagtctcccagccattcttttcagg
gtcccagaatgtgagccaatggcctacccagcagctgagccaatgaaaacatgtgctcct
tgggagtcatgggcgaacctacatcccgatatggccaaactctgtcgacaaaccaaccca
acactaaagcataaccagtattgggtgtag
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integrated database retrieval system
