KEGG   Perognathus longimembris pacificus (Pacific pocket mouse): 125368020
Entry
125368020         CDS       T08928                                 
Symbol
Xrcc1
Name
(RefSeq) DNA repair protein XRCC1 isoform X1
  KO
K10803  DNA-repair protein XRCC1
Organism
plop  Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:plop00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    125368020 (Xrcc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:plop03400]
    125368020 (Xrcc1)
DNA repair and recombination proteins [BR:plop03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     125368020 (Xrcc1)
SSDB
Motif
Pfam: XRCC1_N BRCT BRCT_2 PTCB-BRCT LIG3_BRCT
Other DBs
NCBI-GeneID: 125368020
NCBI-ProteinID: XP_048224781
LinkDB
Position
20:complement(20184413..20198132)
AA seq 626 aa
MPEIRLRHVVSCSSQDSTHCAENLLKADTYRKWRAAKPGEKTISVVLQLEKEEQIHSLDI
GNDGSAFVEVLVGSSAAGTSEQDYEVLLVTSSFMSPSESRSGSNPNRVRMFGSDKLVRAA
AEKRWDRVKIVCSQPYSKDSPYGLSFIRLHSPPDKEEAEAPVQKAAVTKLGQFRVKEEEE
STSSLRPGSLFFSRINKASPATSSEPAGPSYAAATLQASSAASSASPASKASGSASKPQE
PPKGKKKLDLNVEERKAPTKPSAQLLSPALKKPKLQVPSRAPSAAPGSTPGPAPVPEKPR
GEGPKPKGARAGVQELGKVLQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTPDSTHL
ICAFANTPKYSQVLGLGGRIVRKEWVLDCHRMRRRLPSRRYLMAGPGSSSEDEGGSDSGS
SGDEAPKRPRKTPQTKAKPSQAAGPSSPPKPPTPELTKAASPGPQEDTDNEEEPAGRDSG
TDASGDTEDELRRVAAQRQQRHPAGPGENGEDPYAGSTDENTDSEDLPVPELPDFFQGKR
FFLYGEFPGDERRRLIRYVTAFNGELEDYMSDRVQFVITAQEWDPSFEEALMDNPSLAFV
RPRWIYSCNEKQRLLPHQLYGVVPQA
NT seq 1881 nt   +upstreamnt  +downstreamnt
atgccggagatccgtctccgccacgtcgtgtcctgcagcagccaggactcgacccactgt
gcagagaacctgctgaaagcggacacttaccggaaatggcgagctgccaaacccggcgag
aagactatctccgtggtcctgcagttggagaaggaggagcagatccacagcctggacatt
ggcaacgatggctcggccttcgtggaggtgttggtgggcagctcggcagccgggaccagc
gagcaggactacgaggtccttctggtcacctcgtccttcatgtccccctccgagagccgc
agtggctccaaccccaaccgcgtccgcatgtttgggtctgacaagttggtccgggcggct
gcggagaagcgctgggaccgcgtgaagattgtgtgcagccagccttacagcaaggactcc
ccctacggccttagttttatccggcttcatagccccccagacaaagaggaggccgaggcc
cctgtccagaaggctgcagtgaccaaacttggccagttccgggtgaaggaggaggaggag
agcaccagctccctgcggcccggctccctcttcttcagccgcatcaacaaggcgtcccca
gccacctcgagtgagcctgctgggcccagctatgccgcggccacgctgcaggcctcgagt
gccgcctcctcagcttctcctgcgtccaaggcttcgggcagcgcctccaagccccaggag
ccccccaaagggaagaagaagttggatttgaatgtagaagaaaggaaggcccccactaaa
ccatcagcccagcttctgtcacccgccctcaagaaacccaaattgcaagttcccagccgg
gccccatccgcagccccagggtccaccccagggccggccccagtaccagagaagccccgg
ggagaaggccctaagcccaagggcgcccgagccggtgtgcaggagctggggaaggtcctc
cagggcgtggtggtggtgttgagcggcttccagaaccccttccgctccgagctgcgggac
aaggccctggagctgggggccaagtaccggccagactggacccccgacagcacccacctc
atctgtgcctttgccaacacccccaagtacagccaggtcctgggcctgggaggccgcatt
gtgcgtaaggagtgggtgctggactgtcaccgcatgcgccggcggctcccctcccggagg
tacctcatggcggggcctggctccagcagcgaggacgaggggggttctgacagcggcagc
agtggggatgaagcccccaagcggccccgaaagaccccacagaccaaagctaagccctcc
caggcagcaggacccagctcacccccaaagcccccaacccctgaattgaccaaagcagca
tctccaggaccccaggaagacacagacaatgaggaggagccggcaggacgggacagcggg
acggacgcgtccggggacacggaggacgagctgcggagggtggccgcgcagaggcagcag
cgacaccccgcggggcccggggagaacggggaggacccgtacgcaggctccacggacgag
aacaccgacagcgaggacctgccggttcccgagctcccagacttcttccagggcaagcgc
ttcttcctgtacggcgagttcccgggggacgagcgccggaggctcatccgctacgtcacc
gccttcaatggggagctcgaggactacatgagtgaccgagtccagtttgtgatcacagcc
caggagtgggatcccagctttgaggaggccctgatggacaacccctccttggcgttcgtc
cggccccggtggatctactcctgcaacgagaagcagcgcttactcccccaccagctgtac
ggggtggtgccccaggcttga

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