Perognathus longimembris pacificus (Pacific pocket mouse): 125368030
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Entry
125368030 CDS
T08928
Symbol
Trim28
Name
(RefSeq) transcription intermediary factor 1-beta
KO
K08882
tripartite motif-containing protein 28 [EC:
2.3.2.27
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
plop01001
]
125368030 (Trim28)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
plop04121
]
125368030 (Trim28)
Enzymes [BR:
plop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125368030 (Trim28)
Protein kinases [BR:
plop01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
125368030 (Trim28)
Ubiquitin system [BR:
plop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
125368030 (Trim28)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-B_box
ANCHR-like_BBOX
PHD
zf-RING_5
zf-RING_UBOX
zf-C3HC4
PHD_2
PHD-1st_NSD
zf-RING_2
YaaC
Motif
Other DBs
NCBI-GeneID:
125368030
NCBI-ProteinID:
XP_048224798
LinkDB
All DBs
Position
20:28227069..28235110
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AA seq
832 aa
AA seq
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MAASAAAASSAAASAASSSPGPGESSAGSEKRAAASSAAGSAAASASASSPAAGGGEVLE
LLEHCGVCRERLRPEREPRLLPCLHSACSACLGPAAPAAANSSGDGGAAGDGAVVDCPVC
KQQCFLKDIVENYFMRDSGSKAASDAQDANQCCTSCEDNAPATSYCVECSEPLCETCVEA
HQRVKYTKDHTVRSTGPAKSRDGERTVYCNVHKHEPLVLFCESCDTLTCRDCQLNAHKDH
QYQFLEDAVRNQRKLLASLVKRLGDKHATLQKNTKEVRSSIRQVSDVQKRVQVDVKMAIL
QIMKELNKRGRVLVNDAQKVTEGQQERLERQHWTMTKIQKHQEHILRFASWALESDNNTA
LLLSKKLIYFQLHRALKMIVDPVEPHGEMKFQWDLNAWTKSAEAFGKIVAERPGTNSTGP
PPMAPPRAPGPLSKQGSGSNQSMEEGYGFGSDDPYTSAEPHVSGMKRSRPAEGEVSGLMR
KVPRVSLERLDLDLTADSQPPVFKVFPGSTTEDYNLIVIERGAAAAAAGQSGAVPPGAPG
ASPLPAMAIVKEEETEAAIGAPPAATEGPETKPVLMAMTEGPGTEGPRLASPSGSTSSGL
EVVAPEGTSAPAGGPGTLDDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEE
WSCSLCHVLPDLKEEDGSLSLDGGDSTGVVAKLSPANQRKCERVLLALFCHEPCRPLHQL
VTDSTFSLEQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQFNKLTEDKADVQ
SIIGLQRFFETRMNDAFGDTKFSAVLVEPPPLSLPSANLSSQELSGGPGEGP
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atggcggcctcggcggcggcggcctcctcggcagcggcttcggccgcttcgagcagcccg
ggcccgggcgaaagctcggcgggcagcgaaaagcgcgctgccgcctcctcggccgcgggc
tcggccgcagcctcggcctcggcgtcgtctcccgcggcgggcggcggcgaggtgctggag
ctgctggagcactgcggggtgtgccgggagcgcctgaggcccgagcgggagccgcggctg
ctgccctgcctgcactcggcctgcagcgcctgcctggggcccgcggcgccggccgcggcc
aacagctcgggggacggcggcgcggcgggcgacggcgccgtggtggactgccccgtgtgc
aagcagcagtgcttcttgaaagacatcgttgagaattatttcatgcgcgatagcggcagc
aaggctgcctctgatgcccaggatgccaaccagtgctgcactagctgtgaagataatgcc
ccagccaccagctattgtgtggagtgttctgagccactgtgtgagacgtgtgtggaggct
caccagcgggtgaagtacaccaaggatcatactgtgcgctccactgggccagccaagtct
cgggatggtgaacgtactgtctattgcaatgtgcataagcacgaaccccttgtgctgttc
tgtgagagctgcgataccctcacctgtcgggactgccagctcaatgcccataaggaccac
cagtatcagttcctggaggatgcagtgaggaaccagcgtaagttgctggcttctctggtg
aagcgcctcggcgacaaacatgctacattgcagaagaataccaaggaggttcgcagctcg
atccgccaggtgtctgatgtacagaagcgtgtgcaggttgatgtcaagatggccatcctg
cagatcatgaaggaattgaataagcgaggtcgtgtgctggtcaacgatgcccagaaggtt
actgaggggcagcaggaacgcctggagcggcagcactggactatgaccaagatccagaaa
catcaggagcacatcctgcgatttgcatcttgggctctggaaagtgacaacaacactgct
ctgctgctttccaagaagctgatctatttccagctgcatcgagcccttaaaatgattgtg
gatcctgtggagccacatggcgagatgaagtttcagtgggacctcaatgcctggaccaag
agtgctgaggcctttggcaagattgtggctgagcgtcctggtaccaactccacaggtcct
ccacccatggctccaccaagagccccagggcccctgagcaagcagggctcgggcagcaac
cagtctatggaagaaggctacggctttgggtcagatgatccctacacaagtgcagagcct
catgtatcgggcatgaagcggtcccgaccagctgagggtgaagtgagtggcctcatgcgc
aaggtgcctcgtgtgagccttgaacgcctagacctggaccttacagctgatagccagcca
ccagtcttcaaagtctttcctggcagtaccactgaggactacaacctcatcgtaattgag
cgtggtgcggcggcagcagcagctggtcagtcaggggctgttccccctggggctcctggt
gcctcacccctgcctgccatggccattgttaaggaggaggagacagaggctgctattgga
gcccctcctgctgccactgagggtcctgagaccaagcctgtgcttatggcgatgactgag
ggccctggcactgagggcccccgtctggcatcaccaagtggaagtactagctctggcctg
gaggtggtggctcctgagggcacttcagccccagctggtggcccaggcactctagatgac
agtgccaccatctgccgtgtctgccagaagccaggagacttggtcatgtgcaaccagtgc
gagttttgcttccacctggactgccacctacctgctctacaggatgtgccaggggaggag
tggagctgctcgctctgccatgtgcttcctgacctgaaggaggaggatggtagccttagc
ttggatggtggggacagcactggtgtagtagccaagctctcgccagccaaccaacggaaa
tgtgaacgtgtcctgctggccctgttctgccatgaaccctgccgtcctctacaccagctg
gttactgactccactttctccctggagcagcctggtggcaccttggacctaaccctgatc
cgcgcccgcctccaagaaaagctgtcacccccttacagttctccacaggagttcgcccag
gatgtgggccgcatgttcaagcagttcaacaagttgactgaggacaaggcggatgtgcag
tccatcatcggcctacagcgttttttcgagacacgcatgaatgatgccttcggtgacacc
aagttctctgctgtgttggtggagcctccgccgctgagtctgcccagtgctaacctaagt
tcccaggagctgtctggtggtcctggtgagggcccctga
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