Perognathus longimembris pacificus (Pacific pocket mouse): 125368356
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Entry
125368356 CDS
T08928
Symbol
Lig1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03030
DNA replication
plop03410
Base excision repair
plop03420
Nucleotide excision repair
plop03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
125368356 (Lig1)
03410 Base excision repair
125368356 (Lig1)
03420 Nucleotide excision repair
125368356 (Lig1)
03430 Mismatch repair
125368356 (Lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plop03032
]
125368356 (Lig1)
03400 DNA repair and recombination proteins [BR:
plop03400
]
125368356 (Lig1)
Enzymes [BR:
plop01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
125368356 (Lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
125368356 (Lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
125368356 (Lig1)
DNA replication proteins [BR:
plop03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
125368356 (Lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
125368356 (Lig1)
DNA repair and recombination proteins [BR:
plop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
125368356 (Lig1)
NER (nucleotide excision repair)
Other NER factors
125368356 (Lig1)
MMR (mismatch excision repair)
Other MMR factors
125368356 (Lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
125368356
NCBI-ProteinID:
XP_048225248
LinkDB
All DBs
Position
20:complement(22468963..22497993)
Genome browser
AA seq
927 aa
AA seq
DB search
MQRTIRSFFQPANEGKVKKPDKEATTKGSRETDPPPSKAALKERNGVVSQSDSPVKRPAK
KAARVLSSEGEEDDEVLDTPKSQKPVPASPQSSPSSSGTSPENSPFVSDSSPMDISPSGF
PKRRTARKQLPKRTIQDVLEEQSEDKDREAKKRKEGDEAETSRESPTEMDVVNLKGKEED
QPMTPPKSPKAGAPTKTESSPAPRAVGKRKRLEEKQPEEEKQQQEELSKPLPKAPRTLSS
FFTPRKPVVKEEVKGEESCAPRKEAKGPLDPTSYNPGKNNYHPIEDACWKPGQKVPFLAV
ARTFEKIEEVSARLRMVETLSNFLRSVVALSPPDLLPILYLSLNRLGPPQQGLELGVGDG
VLLKAVAQATGRQLESVRAEAAEKGDVGLVAESSRSTQRLMLPPPPLSATGVFNKFRDIA
GLTGSTSTTKKMDIIKGLFVACRHSEARYIARSLSGRLRLGLAEQSVLAALAQAVSLTPP
GQEFPPAVVDAGKGKTAEARKTWLEEQGLVLKQTFCEVPDLDRIVPVLLEHGLERLPEHC
KLSPGVPLKPMLAHPTRGVAEVLKRFDEAAFTCEYKYDGQRAQIHFEEGGEVKIFSRNQE
DNTGRYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQ
VQVCLYAFDLLYLNGEPLVREPLSRRRQLLRDNFVEAEGEFVFATSLDTKDTEQIAEFLE
QSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRA
GRYGGFLLAAYDEDSEELQAICKLGTGFSDEELDTHYQSLKELVLPMPRPYVRADGAVAP
DHWLDPSAVWEVKCADLSLSPIYPAARGLVDSEKGISLRFPRFVRVRKDKEPEQATTSAQ
VACLYRKQSQIQNQLGVDSDSDPEDFY
NT seq
2784 nt
NT seq
+upstream
nt +downstream
nt
atgcaacgaactatcaggtcatttttccaacctgccaacgagggtaaagtgaagaagcct
gacaaagaggccacaaccaagggcagcagagagacagatcccccgccttccaaggctgcg
ctgaaggagcggaatggagtggtgtcccagagtgactctccagtgaagaggccggcgaag
aaggcagcccgggttctgagcagcgaaggggaggaggacgatgaagtgctcgataccccc
aaaagccagaagcctgtgcctgcctccccacagtcctcaccttccagctctggcacgagt
cctgagaacagccctttcgtctcagactcctcccccatggatatttccccgtcggggttc
ccgaagcggcgcacggctcggaagcagctcccgaaacggacaatccaggatgttctggaa
gagcagagtgaggacaaggacagagaagccaagaagaggaaggagggggacgaagcagag
acctcgagagagagccccacagagatggatgtggtaaacctgaaaggaaaagaggaggac
cagcccatgacacccccgaagtctcccaaagccggagctccgacaaagacagaaagcagc
ccagcacccagggcagtgggcaagcggaagcggctggaggagaagcagccagaagaggag
aagcagcagcaggaggagctgagcaagcccctgcccaaagccccccgcacgctcagcagc
ttcttcaccccccggaagcctgtggtcaaggaggaggtgaaaggagaggagtcatgtgct
ccaaggaaggaggccaagggacccctggacccgacgagctacaatcccggcaagaataac
tatcaccccattgaggatgcctgctggaaaccaggccagaaggtcccttttctggctgtg
gcgcggacatttgagaagatcgaggaggtgtctgctcggctccgcatggtggagacactg
agcaacttcctgcgctctgtggtggccctgtcacctccagacctgcttcccatcctctac
ctcagcctcaaccgcctggggcctccgcagcagggcctggagctgggcgttggcgatggt
gtcctcctcaaggccgtggctcaggccacaggccgccagctggagtcggtgcgtgctgag
gcggccgagaaaggcgacgtggggttggtggccgagagcagccgcagcacgcagcggctc
atgctgccgccgcccccactctccgctaccggtgtcttcaacaagttccgcgacatcgct
ggcctcacgggcagcacttccaccaccaagaaaatggacatcatcaaaggcctctttgtt
gcctgccgccactcggaagcccggtacattgccaggtccctgagtggacggctgcgcctc
gggctggctgagcagtctgtgctggctgcccttgcccaggccgtgagcctcacaccccca
ggccaagaattccccccagccgttgtggatgccgggaagggcaagacggcggaagcccgg
aagacgtggctggaggagcagggcctggtcctgaagcagacattctgcgaggtgcctgac
ctggaccgcattgtgcccgtgctgctggagcatggcctggagcggctcccggagcactgc
aagctgagtccaggggtcccgctgaaacccatgctggcacaccccactcggggtgtcgct
gaggtcctgaaacgcttcgacgaggctgccttcacctgcgagtacaaatatgacgggcag
agagctcagatccactttgaggaaggcggggaggtgaagatcttcagcaggaaccaggag
gacaacacagggaggtaccccgacatcatcagccgcatccccaagattaagctcccctcg
gtcacgtctttcatcctggacactgaggcggtggcgtgggaccgggagaagaagcagatc
cagccattccaggtgctcactacccgcaagcgcaaggaggtggacgcatcggagattcag
gtgcaggtgtgcctatatgccttcgacctcctctacctcaacggcgagcccctggtccgg
gagccgctatcccggcgccggcagctgctccgagacaacttcgtggaggccgagggcgag
ttcgtcttcgccacctccctggacaccaaggacacagagcagatcgctgagttcttggag
cagtcagtgaaagactcctgcgaggggctcatggtgaagaccctggatgtggatgccacc
tatgagattgccaagcgctcacacaactggctcaagttgaagaaggactacctcgatggt
gtgggggacaccctggaccttgtggtgatcggcgcctacctgggccgggggaagcgggcc
ggccgctacgggggcttcctgctggccgcctatgacgaggacagcgaggagctgcaggcc
atctgcaagcttgggaccggcttcagtgacgaagagctggacacacactaccagagcctc
aaggagctggtgctgcccatgccacgcccctacgtgcgcgcagatggcgccgtggcccct
gaccactggctggacccgagcgccgtgtgggaggtgaagtgtgcggacctctccctctcc
cccatctaccccgccgcccgcggcctggtggacagcgagaaggggatctccctgcgcttc
ccgcgctttgtccgtgtccgtaaagacaaggagccggagcaggccaccaccagcgcccag
gtggcctgcctgtaccggaagcagagtcagatccagaaccagctgggcgtcgactccgac
tctgatccggaggatttctactaa
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