Perognathus longimembris pacificus (Pacific pocket mouse): 125368510
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Entry
125368510 CDS
T08928
Symbol
Dhx34
Name
(RefSeq) probable ATP-dependent RNA helicase DHX34
KO
K20101
ATP-dependent RNA helicase DHX34 [EC:
5.6.2.6
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plop03019
]
125368510 (Dhx34)
Enzymes [BR:
plop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125368510 (Dhx34)
Messenger RNA biogenesis [BR:
plop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
125368510 (Dhx34)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2_DHX34
Helicase_C
HA2_C
OB_NTP_bind
DEAD
HA2_N
AAA_22
AAA_16
TsaE
nSTAND3
AAA_19
ResIII
Motif
Other DBs
NCBI-GeneID:
125368510
NCBI-ProteinID:
XP_048225477
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All DBs
Position
20:21513879..21526376
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AA seq
1150 aa
AA seq
DB search
MPPPGTRDGRDHRSRHRAPNAKEAPEKWDWNCPETRGLLEDVFFGDGGCIRRGSEGCQKF
WAFFERMQRFQSLRPSRKEETEPKSPPCGIPALADLPRTYDPRYRINLSVLGPDPRGSRG
PAARLPPERVSEFRRALLHYLDFGQKQAFARLAKLQRERAALPIAQYGRRLLQTLAEHQV
VVVAGDTGCGKSTQVPQYLLAAGFSHVACTQPRRIACISLAKRVAFESLSQYGSQVGYQI
RFESSRSEATKIVFLTVGLLLRQIQREPSLPQYQVLIVDEVHERHLHSDFLLGVLHRLLP
RRPDLKVILMSATINIELFSSYFSHAPVVQVPGRLFPITVVYQPQEAEPAASKSEKLDPR
PFLRVLETIDHKYPPEERGDLLVFLSGMAEISSVLEAAQTYASHTQRWIVLPLHSALSVA
DQDKVFDVAPPGVRKCILSTNIAETSVTIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWI
SQASAEQRKGRAGRTGPGVCYRLYAESDYDAFTPYPVPEIRRVALDSLVLQMKSMSVGDP
RTFPFIEPPPPASLETAILYLRDQGALDRAEALTPIGSLLAQLPVDVVIGKMLILGATFG
LAEPVLTVAAALSVQSPFTRSAQSSVECAGARRPLESDQGDPFTLFNVFNAWVQVKSERG
TNSRRWCRRRGVEEQRLYEMANLRRQFKELLEDHGLLAGAPALSRDGSSRLQERRERRAL
QQLKRQHEEGVGRGRKVLRLHGDLGAGSSDEEDAAGRGAHDRVDIQDVKFKLRHNLAQLQ
AAASAAQDLGGERLALLKLLLARGLYPQLAVPDAFNSGRKDSDQIFHTQAKQGTVLHPTC
VFASSPEVLHSQELDTEGQGSRDARDKMSRSHQLLTFVSLLETNKPYLVNCVRIPALQSL
LLLSRSLDTNGDCSRVVADGWLELRLADSESAIRLLAASLKLRARWESALDQQLARQARR
RQRPEEEEEEEDEEEDRLVLRSKEVAALGRELLQFMASKVPYSLRRLTGLEAQNLYVGPQ
TVTTAPSLPGLFGNSTLSPHPTKGGYAVTDFLTYNCLVSDTDLYSDCLRTFWTCPHCGLH
LPFTPLERMAHENTCAQAPQDGAEAEEAPVPIQKASALQRPYHCDACGQDFLFSPTEALR
HRRQHLGQRQ
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgccccctccagggaccagggatgggagggaccaccgatcccgccaccgggctcccaat
gccaaagaagcccccgagaagtgggactggaattgtccggagacccgtggcctcttagaa
gacgtcttctttggtgatgggggttgtatccgtcggggttcggagggctgccagaagttc
tgggccttctttgagcgtatgcagaggtttcagagtctcaggccatccaggaaggaggag
acagagcccaaatctcccccatgtggcatcccagccctggccgacctccctcgcacttat
gacccccgctaccgcatcaacctgtccgtccttggccccgacccgcggggctctcggggg
ccggctgctcgcctgcctccagagagggtgtcggagttccgccgggccctcttgcactac
ctggactttggccagaagcaggcatttgcgcggttggccaagctgcagcgtgagcgcgcc
gctcttcccattgctcagtacgggcgccgcctgctgcagacgctggctgagcaccaggtg
gtggtggtggccggcgacacgggctgtggcaagtccactcaggtgccccagtacctgctg
gcagctggcttcagtcacgtggcgtgcactcagcctcggcgaatcgcctgcatctcgctg
gccaagcgcgtggccttcgagagcctcagtcagtacggctcacaggtcggctaccagatc
cgcttcgaaagctctcggtcggaggccaccaagatcgtgttcctgacggtggggctgctc
ctccggcagatccagcgggagcccagcctaccgcagtaccaggtcctgattgtggatgaa
gtacatgagcgccacctccacagtgacttcctgctgggggtcctccatcgcctgctgccc
aggaggcctgacctcaaggtcatcctcatgtccgccaccatcaacatcgagctcttctcc
agctacttcagccacgctcccgtggtgcaggtgccagggcggctcttccccatcacggtc
gtgtaccagcctcaggaggcagagcccgccgcatccaagtcagagaagctggaccctcgg
cctttcctcagggtgctggagaccatcgaccacaagtacccccccgaggaacggggggac
ctcctggtcttcctcagcggcatggctgagatcagctcagtgctggaggccgctcagacc
tacgccagccacacccagcgctggatagtgctgccactacacagtgctctgtctgtggcg
gaccaggacaaggtattcgacgtggcgccccctggagtccggaaatgcattctctccacc
aacatcgctgagacctcggtcaccattgatgggattcgctttgtggtggattctgggaag
gtgaaggagatgagctacgaccctcaggccaagctgcagcgtctgcaggagttctggatc
agccaggcgagcgccgagcagcgcaagggccgcgcgggccgcacaggccctggggtctgc
taccgcctctatgctgagtctgactacgacgccttcaccccctatcccgtgccggaaatc
cgcagggtggccctggacagcctggtgctgcagatgaagagcatgagtgtgggggatccc
cgaaccttccctttcatcgagcctcctcctccagccagcctggaaactgctatcctctac
cttcgagaccagggggccctggatagagcagaggccctcacccccatcgggtccctgctg
gcccagctccctgtggacgtggtaatcgggaagatgctcatcctgggagccacgtttggc
ctggccgagccggtgctcaccgtggccgcggccctcagcgtccagtcgcccttcacccgc
agcgcccagagcagcgtggagtgcgcaggcgcccggcggccgctggagagcgaccagggc
gaccccttcacgctcttcaacgtcttcaatgcctgggtgcaggtgaagtcagagcggggc
acgaactcgcgccggtggtgccggcgtcgcggcgtggaggagcagcggctgtatgagatg
gccaacctgcggcgccagttcaaggagctgctggaggaccacgggctgctggccggggcc
ccggcgctgtccagggacggcagcagccggttgcaggagcggcgggagcggcgggccctg
cagcagctgaagcggcagcacgaggagggcgtgggccgcgggcgcaaggtgctgcggctg
cacggggacctgggcgcgggctccagcgatgaggaggacgcggccggccgcggggcccac
gaccgcgtggacatccaggacgtgaagttcaagctccgccacaacctggcccagctgcag
gcggccgccagcgccgcgcaggacctgggcggcgagcgcctggcgctgctcaagctgctg
ctggcccggggcctctacccgcagctggccgtgcccgacgccttcaacagcggccgcaag
gactccgaccagatcttccacactcaggccaagcagggcaccgtgctgcaccccacctgc
gtctttgccagcagccccgaggtgctgcactcccaggagctggacactgagggccagggg
agccgagatgcccgggacaagatgagccgttcacaccagctcctcacctttgtctcgctg
ctggagaccaacaagccatacctggtcaactgtgtccgcatccctgccctccagtccctc
ctgctgctcagccgctctctggacaccaatggcgactgctcgcgcgtggtggccgacggc
tggctggagctgcggctggcggacagtgagagcgccatccggctcctggccgcctccctg
aagctccgagcccgctgggagagcgccctggaccagcagctggcacgtcaggcccggcgg
cggcagcgacccgaggaggaggaagaggaggaggacgaggaggaggataggctggtgctc
cgcagcaaggaagtggccgccctgggcagggagctgttgcagttcatggcctccaaggtt
ccctacagcctgcggcggctcacaggccttgaggcccagaacctctatgtgggaccccag
acagtcacaactgcccctagcctccctggtctctttggaaactccaccctgtcccctcac
cccacgaaagggggctacgcggtcactgacttcctcacctacaactgccttgtgagcgac
acggacctgtacagcgactgtctgcgcaccttctggacctgcccgcactgcggcctgcac
ctgccgttcacgcccttggagcgcatggcccatgagaacacctgtgcacaggccccgcag
gacggtgcagaggcagaggaagccccggtgcctatccagaaggcgtctgccctgcagagg
ccttaccactgcgatgcctgtggccaggacttcctgttctcccccaccgaggcgctgcgg
caccggaggcagcacctgggacagcgccagtga
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