Pleurocapsa sp. PCC 7327: Ple7327_4349
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Entry
Ple7327_4349 CDS
T02367
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
plp
Pleurocapsa sp. PCC 7327
Pathway
plp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ple7327_4349
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plp03019
]
Ple7327_4349
03009 Ribosome biogenesis [BR:
plp03009
]
Ple7327_4349
Enzymes [BR:
plp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Ple7327_4349
Messenger RNA biogenesis [BR:
plp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Ple7327_4349
Ribosome biogenesis [BR:
plp03009
]
Prokaryotic type
rRNA helicases
Ple7327_4349
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
MatB
HEM4
Flavi_DEAD
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AFY79460
UniProt:
K9TA91
LinkDB
All DBs
Position
4652508..4653926
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AA seq
472 aa
AA seq
DB search
MTISFKSLGLSDTRVKQLENLGFINPTNIQAQAIPLLLEGRDVVGQSQTGTGKTAAYSLP
ILDAIDTQNSAVQALVLTPTRELAQQVAEAIKDFTGDRRLFVLTVYGGQSIERQIRSLER
GVQIVVGTPGRVIDLLDRKKLILDQLRFVVLDEADEMLSMGFIDDVKKILKQTPANRQTA
CFSATMPREIRELVNQFLLSPVTVTVEQPQAAPAKIEQHVYMVPRGWTKLKALQPILEIE
NPESAIIFVRTKQTAAELTSKLQEAGQSVDEYHGDLSQIQRERLVQRFREGKVRLVVATD
IAARGLDVENLSHVINYDLPDNTETYIHRIGRTGRAGKTGTAIALVEPIDRRALKQIERR
LRQNIEVSRIPTRSQVEAKRLEKLQAQIKESLAGERMASFLPLVRELSAEYDPQAIAAAA
LQMMYDQNCPNWMKTDWEVPAAAPLPKPNLKRKYNKNNRSSDRKPVSQNQLR
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgactatttccttcaaaagcttaggattatcagacactagagtcaaacagttagaaaat
ttaggttttatcaatcctacaaatattcaagcccaggcaattcccctgctactagaaggt
cgcgatgttgtcggtcaatcgcaaaccggaacgggaaaaaccgcagcctactcgctgcca
atcctcgatgcgatcgatacgcaaaattctgccgtgcaggcattagttttaacgccgacc
agagaattagcccaacaagttgccgaagcgattaaagattttacaggcgatcgccgactc
ttcgttcttaccgtctatggcggtcaatcgatcgaacgtcaaatccgcagtctggagcga
ggcgttcagatcgtcgtaggcactcccggacgtgttattgacctgctcgatcgcaaaaaa
ctcatcttagaccaacttcgttttgtcgtactcgacgaagccgatgaaatgttgagcatg
ggtttcatcgacgacgtgaaaaagatcctcaaacagacgccagcaaatcgtcagacggct
tgtttctcagcaactatgccgcgagaaattcgcgagttggtcaatcaattcttactatct
cccgtcaccgtcaccgtagaacagccgcaagcagctcccgctaaaatcgagcagcatgtt
tatatggttcctcgtggctggacgaaactcaaagccctgcaaccgattctagaaatagaa
aatccagaatctgccattatctttgtacgtaccaagcaaacggcagccgaactgaccagc
aagctacaagaagctggtcaatccgtcgatgaatatcatggcgatctcagccaaattcaa
cgggaaagactcgtgcagcgcttccgggaagggaaggttcgcttagtggtagcaactgat
attgccgcgcggggtctggacgtggagaatttgtctcacgtgattaactacgacctgccc
gataatacagaaacctacattcaccgcatcggtcgcaccggacgagcaggtaagacagga
acggcaattgctttggtagagccgatcgatcgccgagcgctcaagcaaatcgaacgccgc
ctccgccaaaatatagaagtcagccgcattccaactcgctctcaagtagaagccaagcgc
ttagaaaaactgcaagcgcagattaaagagtctttggcaggagaacggatggcttctttc
ttgcccctcgtgcgggaattaagcgctgaatacgacccgcaggcaatcgcggcagcagct
ttgcaaatgatgtacgaccaaaactgtcccaattggatgaaaacggattgggaagtccct
gcggcagctcccttacccaaacccaatctcaagcgcaaatacaacaaaaacaatcgctcg
tcagacagaaagcctgtctctcagaatcaactgcgctaa
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