Pseudomonas lundensis: AA042_07830
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Entry
AA042_07830 CDS
T05473
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
plq
Pseudomonas lundensis
Pathway
plq02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
plq00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AA042_07830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plq03021
]
AA042_07830
Transcription machinery [BR:
plq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AA042_07830
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
AOZ12573
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All DBs
Position
1740844..1742694
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AA seq
616 aa
AA seq
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MSGKAQQQSRIKELITLGREQKYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGIPVHES
APDADALMLADADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMGAIAHFPGTVDHILSEYTRVTTEGGRLSDVLSGYIDPDDGITPPAAE
VPPPVDPKTAKAEGDDEEEEKDDATDDEEEVESGPDPIIAAQRFGAVSDQMEITRKALKK
HGRDSKQAIAELVALAELFMPIKLVPKQFEGLVERVRSALERLRAQERAIMQLCVRDARM
PRTDFLRLFPGNEVDESWSDALAKGKSKYAEAIARLQPDIIRCQQKLSALEAETGLRIAE
IKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
PTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATV
ESLKEATRDVLGGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPTRSEHLRSFLDE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcagtctcgtatcaaagagttgatcaccctcggccgtgag
cagaagtatctgacttacgcagaggtcaacgaccacctgcccgaagatatttcagatccg
gagcaagtggaagacatcatccgcatgattaatgacatggggatccccgtacacgagagt
gctccggatgcggacgcccttatgttggccgatgctgacaccgacgaagccgctgctgaa
gaagcagctgcagcgttggcggcagtagaaaccgatattggtcgcactaccgacccagta
cgcatgtatatgcgtgaaatgggcacggtagaactgctgacacgcgaaggcgaaattgaa
atcgccaagcgtatcgaagaaggcatccgcgaagtgatgggcgcaatcgcgcacttccct
ggcacggttgaccatattctctccgagtacactcgcgtcaccaccgaaggtggtcgcctt
tctgacgtcctgagcggttatatcgacccggacgatggaattacgccgcctgcagccgag
gttccgcctcctgtcgatcctaaaacggccaaggccgaaggtgatgacgaagaggaagag
aaggacgacgctaccgatgacgaggaagaggtcgaaagcggccccgatccaatcatcgcg
gcacagcgcttcggcgccgtttccgatcagatggaaatcactcgcaaggcactgaagaag
cacggtcgcgacagcaagcaggcgattgccgagctggttgccctggctgagctgttcatg
ccgatcaagctggtgcccaagcagttcgaaggcctggttgaacgtgttcgtagcgctctg
gagcgtctgcgtgcacaagagcgggccatcatgcagctgtgcgtccgtgatgcacgcatg
ccgcgtaccgatttccttcgcctgttcccgggcaatgaagtcgacgaaagctggagcgac
gcgctggccaaaggcaaaagcaaatacgctgaagccattgcccgcttgcaaccggacatc
atccgttgccagcaaaagctgtctgctctagaagcagaaaccggcttgaggattgccgag
atcaaggacatcaaccgtcgcatgtcgatcggtgaggccaaggcccgccgcgcgaagaaa
gagatggttgaagccaacttgcgtctggtgatctccatcgccaagaagtacaccaaccgt
ggcttgcagttcctcgacctgatccaggaaggcaacatcggcttgatgaaagcggtagac
aagtttgaataccgccgcggctacaaattctcgacttatgccacctggtggatccgtcag
gcgatcactcgctcgattgccgaccaggcacgcaccatccgtattccggtgcacatgatc
gagacgatcaacaagctcaaccgtatttcccgccaaatgctgcaggaaatgggtcgcgaa
ccgaccccggaagagctgggcgaacgcatggaaatgcctgaggacaaaatccgcaaggta
ttgaagatcgctaaagagccgatctccatggaaaccccgatcggtgatgacgaagactcc
catctgggtgatttcatcgaagactcgaccatgcagtcgccaatcgatgttgccaccgtt
gagagccttaaagaagcgacacgcgatgtacttggcggccttacagcacgtgaagccaaa
gtactgcgcatgcgcttcggtatcgacatgaataccgaccacacccttgaggaggttggt
aagcagttcgacgttacccgtgagcggattcgtcagatcgaagccaaagcgttacgcaag
ctgcgccacccgacgagaagcgagcacctgcgctccttcctcgacgagtga
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