Pseudomonas lundensis: AA042_08655
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Entry
AA042_08655 CDS
T05473
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
plq
Pseudomonas lundensis
Pathway
plq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AA042_08655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plq03019
]
AA042_08655
Enzymes [BR:
plq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AA042_08655
Messenger RNA biogenesis [BR:
plq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AA042_08655
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AOZ12714
UniProt:
A0AAX2HC75
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All DBs
Position
complement(1917315..1919165)
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AA seq
616 aa
AA seq
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MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
EKLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN
PQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPTKRQNLLFSATFSKDITDLAGKLLRNPERIEVTPPNTTVERIEQRVFRLPASHKRALL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKAGTV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISMVAPDEEKL
LKSIERMTKQKIADGDLMGFDASTIEAEKPEVRERPDVRNPRNPPRGPRGDGPNGGGGGR
KDKGKDKGKEKPAAARGERPAREHKPREGTPAREPRQQAAAAVPRPDANRAPDEFRDDDV
DNFGNRADYVSPYQNKNNQSRGRRPGAPAQGTGAAPAGRTGGRQNGPRTGTGASTGTPPA
KRSGPRNGAPRDGQARRENRPARDDRQEPAVKGPRENQPKIMHKESKSDRFPTPEQLDQL
PNRPRGEKPALLTRNR
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccattgaagcagcgggc
tataccgagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggttgcggctcagacaggtactggtaaaaccggcggcttcgctcttccgattctg
gaaaagctgtttcccaatggccacccagacaaatcccagcgtcacggtccacgccaacca
cgcgtactggtcctgacgcctacccgcgaactcgccgcacaggtccacgagagcttcaag
ctctacgcccgtgacctgaagttcgtcagcgcctgcatcttcggcggcgttggcatgaac
cctcaggttcaagccatggcccgcggtgtagacgtgttggtcgcttgccccggtcgtttg
ctcgacctggcgggccaaggcagtgtcgacctttcccacgttgaaatcctggtgctcgat
gaagccgaccggatgctcgacatgggcttcgtccacgacgtgaaaaaagtgctcgcgcgc
ctgccgaccaagcgtcaaaacctgctgttttcggcgacgttctccaaagacatcaccgat
ctggccggcaagctgctgcgcaacccggagcgtattgaagtcacgccgcccaacaccacg
gtcgagcgtatcgaacagcgcgtgttccgcctgccagccagccacaagcgcgccctgctg
gcgcacttgatcacggccggtgcgtgggagcaggtgttggtcttcacccgcaccaagcac
ggcgccaaccgtctggctgaatacctggacaagcatggcctgagcgctgtcgcgatccac
ggcaacaagagccagaacgcgcgcaccaaggcgctggccgacttcaaggcaggcactgtg
cgtattctggttgcgaccgatatcgcggcccgtggcctggacatcgatcagttgccgcac
gtggtcaacttcgaactgcccaacgtggatgaagactacgttcaccgtatcggccgtacc
ggccgtgccggtcgttcgggcgaagcgatctcgatggttgcgccggacgaagaaaaactg
ctgaaaagcatcgaacgcatgaccaagcagaaaatcgccgacggcgacctgatgggcttt
gatgccagcacgattgaagctgaaaagcctgaagtgcgtgagcgtccggatgtgcgtaac
ccgcgcaacccgccgcgtggcccacgtggcgacggtcctaatggcggcggtggcggtcgt
aaggacaaaggcaaagacaagggtaaagaaaaaccggccgcagcccgtggcgaacgcccg
gcccgtgagcacaaaccacgcgaaggcacaccggcgcgcgaaccgcgtcagcaagcggcc
gctgccgtcccgcgcccggacgccaaccgtgcgccggacgagttccgtgatgacgacgtg
gacaactttggtaaccgcgctgattacgtcagcccgtaccagaacaaaaacaaccagagc
cgtggtcgtcgtccgggcgctccggcgcaaggcaccggcgcggctccggccggtcgcacc
ggcggtcgtcagaacggtccacgcaccggcacgggcgcaagcaccggtacgccgcctgcc
aaacgcagtggcccgcgcaacggcgctccgcgtgacggccaggcccgtcgcgagaaccgt
ccggcccgggatgatcgccaggagccagccgttaaaggccctcgcgagaatcagccgaag
atcatgcacaaagagtcgaaaagcgatcgcttcccgacgcctgagcagctcgatcaactg
ccgaaccgtccacgcggtgagaagccagccttgctgacccgcaaccgctga
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