Pseudomonas lundensis: AA042_08975
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Entry
AA042_08975 CDS
T05473
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
plq
Pseudomonas lundensis
Pathway
plq03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
plq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AA042_08975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plq03400
]
AA042_08975
Enzymes [BR:
plq01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
AA042_08975
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
AA042_08975
DNA repair and recombination proteins [BR:
plq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AA042_08975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
DZR
Motif
Other DBs
NCBI-ProteinID:
AOZ12772
LinkDB
All DBs
Position
complement(1980791..1981603)
Genome browser
AA seq
270 aa
AA seq
DB search
MPELPEVETTRRGIAPHLEGQRVSRVIVRERRLRWPIPEDLDVRLSGQKIVGVERRAKYL
LINAEVGTLISHLGMSGNLRLVEAGSQAAKHEHVDIELESGLALRYTDPRRFGAMLWTHD
PLNHALLLRLGPEPLTDLFDGERLFQLSRKRAMAVKPFIMDNAVVVGVGNIYATEALFAA
GIDPRREAKSISRARYLKLAIEIKRILAAAIERGGTTLRDFIGGDGQPGYFQQELFVYGR
AYEQCKVCGSELREVKLGQRSSVFCPRCQT
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattacctgaagtcgaaaccactcgccgcggcattgccccgcaccttgaaggg
cagcgggtcagccgggtgatcgtgcgtgagcggcgcctgcgttggccgattcccgaagac
ctggatgtgcgtttgtccgggcagaaaatcgtcggggtcgaacgtcgcgccaagtacctg
ctgattaacgccgaagtcgggacattgatcagccatttgggcatgtcgggtaatttgcgt
ctggttgaggcggggtcacaggcggccaagcatgagcacgtggacatcgaactggagtcc
gggcttgccctgcgctacaccgacccgcgccgctttggcgcgatgctctggacccacgac
ccgctcaaccacgcactgctgttgcgtctggggcctgagccactgaccgatctgtttgac
ggcgagcgcctgttccagctgtcgcgcaaacgcgccatggcggtcaagccgttcatcatg
gacaacgccgtcgtggtgggcgtgggcaatatctatgcgactgaagcgctgtttgcggct
gggattgacccgcgccgcgaagccaaaagcatttcgcgggctcgctatctgaagctggcg
atcgagatcaaacgcatattggcggcagccattgagcgcgggggcaccaccctgcgggac
ttcattggtggcgatggccagcccggctacttccagcaagaactgtttgtgtacgggcgc
gcctacgagcagtgcaaggtgtgcggcagcgaattgcgcgaggtcaagctgggccagcgc
tcaagcgtgttctgcccgcgctgccagacctga
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