KEGG   Pseudomonas lundensis: AA042_15010
Entry
AA042_15010       CDS       T05473                                 
Name
(GenBank) RNA polymerase subunit sigma
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
plq  Pseudomonas lundensis
Pathway
plq02020  Two-component system
Brite
KEGG Orthology (KO) [BR:plq00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    AA042_15010
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:plq03021]
    AA042_15010
Transcription machinery [BR:plq03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     AA042_15010
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_ECF Sigma70_r4 HTH_23 HTH_24 HTH_20 GerE HTH_28 HTH_10 TnsD HTH_IclR HTH_Tnp_ISL3 HTH_40 Xre-like-HTH Trp_repressor HTH_38 PhyR_sigma-like HTH_5 HTH_36 HTH_11 HTH_AsnC-type HTH_Crp_2 Rv2175c_wHTH HTH_DeoR HTH_7 HTH_26 HTH_31 Phage_TAC_14 LacI
Other DBs
NCBI-ProteinID: AOZ15146
UniProt: A0ABX4GKY3
LinkDB
Position
complement(3322098..3322586)
AA seq 162 aa
MSQSNTIEGLYLDHHRWLTGWLRHKLGCPQGAADLAQDTFMRLLTARETPDIAQPRAFLT
TVAKRVLFNHYRRQDLERAYLLALAEQPQALAPSEEERAIILQTLMELDQLLDGLPSPVK
RAFLLAQVDGLSYADIAAQLGISIATVKRHLNKAAMRCYFAL
NT seq 489 nt   +upstreamnt  +downstreamnt
ttgtcgcagtcaaataccattgaaggcctgtatctggaccaccaccgctggctcacggga
tggctgcggcacaagctcggctgcccgcaaggcgccgccgacctggcacaagacacgttc
atgcgattgctcacggcacgggagacgccggacatcgcgcagccacgggcgtttttgacc
acggtcgccaagcgcgtgctgttcaatcattaccgtcgccaagaccttgagcgtgcttat
ctgctggccctggccgagcaaccgcaagcgctggcgcccagtgaagaagagcgcgccatc
atcctgcaaaccctgatggagctggaccaattgctcgacggcctgccgtccccggtcaag
cgtgcctttttactcgcacaagtcgatggcctcagctacgccgacatcgctgcgcaactg
ggcatttcgattgcgaccgtcaaacgtcatttgaacaaagccgccatgcgctgctatttc
gcgctatga

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