Pseudomonas lundensis: AA042_17845
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Entry
AA042_17845 CDS
T05473
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
plq
Pseudomonas lundensis
Brite
KEGG Orthology (KO) [BR:
plq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plq03019
]
AA042_17845
Enzymes [BR:
plq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AA042_17845
Messenger RNA biogenesis [BR:
plq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AA042_17845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
AAA_25
nSTAND3
NACHT
T2SSE
AAA_30
ABC_tran
SRP54
Motif
Other DBs
NCBI-ProteinID:
AOZ14305
UniProt:
A0AAX2H6C7
LinkDB
All DBs
Position
3941135..3945046
Genome browser
AA seq
1303 aa
AA seq
DB search
MTDESPAIDKLLKNLDHAMIADRHTLRRQLHELRKKPDDAKLAAWVARVEASCAQVTARA
ASVPLIRYDEHLPIAAKRDEIKAALLKHQVLILAGETGSGKTTQLPKICLEIGRGQHGLI
GHTQPRRIAARSVASRVAEELGTPLGALVGYQVRFEDQSDSNTLIKLMTDGILLAETQHD
RFLERYDTIIVDEAHERSLNIDFLLGYLKILLPRRPDLKVIITSATIDLERFSKHFNDAP
IVEVSGRTFPVETWYRPLTAEQDEEGNSVEEDLSVDQAIIATLDEIAAHERHERKSPGDV
LVFLPGEREIRDAADMLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAET
SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICVRLYA
EEDFNGRPEFTDPEILRTNLAAVILQMLHLRLGEITAFPFIEPPDGKAITDGFNLLQELS
AVNRENQLTPLGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSVQDPRERPPERQ
QAADQAHAQWKDVDSDFAALINVWRGFEEQRQALTASPLRNWCRKNFLNYLRLREWRDSH
RQLSLICRDLQLSVNKEPADYPKLHKAVLSGLLSQIGQKSEEGDYLGARQRRFWIHPSSG
LGKKRPQWLMTAELVETTKLYARMVAKIEPDWIEPLAGHLVKKNYFEPHWEKKRGQVVAF
EQITLFGLIVVGRRPVHYGPIDPVLSRELFIREGLVRGEIQSRAKCLAANARLLEQLDEL
EAKARRRDILADEETLFAFYDARLPAEIHQTATFDSWYRVNSQKDPQLLIMREEDVLARE
ATEITAQHYPDTLRLGDLTLALSYHFEPNHPRDGVTVKVPAPLLPVLPPERLEWLVPGMI
EAKCIALVRSLPKALRKNFVPVPDFVKAALQRMEFGQGSLPQALGRELLRMTGVRVSDEA
WAEAAQQVDSHLRMNLEIVDAHGKFLGEGRDLAELTARFAEASQAALAVPQSAESQQPVQ
ARGFAPVAEKTQQKIAGLSMTVYPALVEEGNTVKEGRFSTPAEAEYQHRRALQRLLMQQL
AEPAKFLRGKLPGLTELGLLYRELGRVESLVEDILLASLDSCILEGEAVLPRDGAGLASL
AERKRAGWTEHAEKLAKLTLDILKLWHGLQKRFKGKIDLAQAVALNDIKQQLSHLVYPGF
VRETPAMWLKELPRYLKAIELRLEKLPGQVQKDRVWSGELSGLWAQYQARATKHAQEGKR
DPQLELYRWWLEEYRVSLFGQQLGTKVPISDKRLSKQWSQVEA
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgactgacgaatcgcctgctatcgacaagctgttgaaaaacctcgatcacgccatgatt
gccgaccgccacacgctgcgtcggcagttgcatgagctgcgcaaaaaaccggacgacgcc
aagctggcggcctgggtggcgcgggttgaggcgtcgtgcgcgcaggtgacggcgcgggcg
gccagtgtgccgttgattcgctatgacgaacacttgccgatcgccgccaagcgcgatgag
atcaaggccgcgctgctcaagcatcaggtgttgattctggccggtgaaaccggttcgggc
aaaaccacccagttgccaaaaatctgcctggagatcgggcgcggtcagcacggtttgatt
ggccatacgcagccccggcgtatcgccgcgcgcagcgtggccagtcgcgtggccgaggaa
ctggggacaccgttgggcgcgttggtcggctatcaggtgcggtttgaggatcagagcgat
tccaacacgctgatcaagttgatgaccgacgggattttgctggccgaaacccagcacgac
cgcttcctcgaacgctacgacacgatcatcgtcgacgaagcccacgaacgcagcctgaac
atcgactttttgctgggttacctgaaaatcctgctgccccggcgtccggacctcaaggtc
atcattacctcggccaccatcgatctggagcgtttctccaagcacttcaacgatgcgccg
attgtggaagtctcgggccgcacgttcccggtcgagacctggtatcgcccgttgaccgcc
gagcaggacgaggagggcaacagcgtcgaagaggatttgagcgtcgatcaggcgatcatt
gcgacgctggacgaaattgctgcccacgagcgtcatgagcgcaagagccccggcgacgtg
ctggtgtttttgcccggcgagcgcgaaatccgcgatgccgccgacatgctgcgcaaggcc
cagcttaaacacaccgaaatcctgccgttgtatgcacgactgtcaccggccgagcagcag
cggattttccagtcgcaccccggacgccgcgtggtcttggcgaccaacgtcgcagaaacc
tccctgacggtgccgggcattcgttatgtgattgacagcggcaccgcacgcatcagccgc
tacagctaccgggccaaggtccagcgcttgccgatcgaagccatttcccaggccagcgcc
aatcagcgcaagggccggtgcgggcgggttgagccgggtatctgcgtgcggttgtacgcc
gaagaagacttcaacgggcgcccggaatttaccgaccccgagattctgcgtaccaacctt
gcggccgtcatcctgcaaatgctgcacctgcgtctgggggaaattacggcgttcccgttc
atcgagccgccagacggcaaagccattacggacggcttcaacctgttgcaggagctgtcc
gccgtcaaccgcgaaaaccagctgacgccgctgggccgccaactggcgcgcctgccggtc
gacccgcgcatggggcgcatgctgcttgaagcggccaagctcggcagcttgcaggaagtg
ttgatcgtggccagtgcgatgtcggtgcaagacccgcgcgagcgtcccccggagcgtcag
caggcggccgatcaggcccacgcgcaatggaaggatgtggactcggactttgccgcgctg
atcaatgtgtggcgcggatttgaagagcagcgccaggcgctgaccgccagtccgctgcgc
aactggtgccgcaagaatttcctgaactacctgcgcttgcgcgagtggcgcgattctcac
cgtcaactgagcttgatctgccgtgacctgcaactgtcggtcaataaagaaccggcggat
taccccaagctgcacaaggccgtgttgtcggggttgctcagccagatcgggcagaagtcc
gaagaaggtgattacctgggcgcgcgtcagcgtcggttctggattcacccgtcttcgggg
ttgggcaaaaaacgcccgcaatggctgatgaccgccgagctggtggaaaccaccaagctg
tatgcgcgcatggtggccaagatcgagccggactggatcgagccgctggccgggcatctg
gtcaaaaagaattactttgagccgcactgggagaaaaaacgcgggcaagtggtggccttt
gagcaaatcacgctgttcggtttgatcgtggtgggccgtcgccccgtgcattacgggccg
attgacccggtgctgtcccgtgagctgtttatccgcgaagggctggtgcgcggtgagatc
cagtcgcgggccaagtgcctggcggccaatgcccggttgctggaacagctcgacgagctg
gaagccaaggcccggcgccgtgacattctggcggacgaagagaccctgtttgcgttctac
gacgcgcgcctgcccgccgagattcatcagaccgcgactttcgacagctggtaccgggtc
aacagtcagaaagacccgcagctgttgatcatgcgcgaagaagacgtgctggcccgcgag
gccactgaaatcaccgcccagcattacccggacacattgcgtctgggggatttgacgctg
gcgctcagttatcactttgagccgaaccacccccgtgacggggtgacggtcaaagtgccc
gcgccgctgttgcccgtgctgccgcccgagcgcctggagtggctggtgccggggatgatc
gaggccaagtgcatcgcgctagtgcgcagcctgcccaaggcattgcgcaagaacttcgtg
ccggtgccggacttcgtcaaggctgcgttgcagcgtatggagtttggtcagggttcgttg
ccccaggcgctggggcgtgaactgttgcgcatgacaggcgtgcgggtcagtgatgaggcg
tgggccgaggcggcgcagcaggtcgacagtcatctgcggatgaacctggaaatcgtcgac
gcccatggcaagttccttggcgaaggccgcgatctggccgagctgaccgcgcgttttgct
gaagccagccaagccgctctggcggtgccgcagagcgctgaaagccaacagccggtgcag
gccaggggctttgccccggtggcggagaaaacccagcaaaagattgccggtttgtcgatg
acggtgtacccggcgctggtcgaagagggcaatacggtcaaggaaggtcgattctcgacc
ccggccgaggccgaataccagcaccgtcgcgccctgcagcgcttgctgatgcaacagttg
gccgaacctgcgaagttcctgcggggcaaattgccggggctgaccgaactgggcttgctg
taccgcgagctgggacgggttgaaagtctggtcgaagacattctgctggccagcctcgac
agctgcattcttgaaggcgaggccgtgctgccccgtgatggcgccgggctggcttcactg
gccgaacgcaagcgcgccggctggacggaacacgcggaaaaactggcgaaactgacgctg
gacatcctcaagctgtggcacggtctgcaaaagcgcttcaaaggcaagatcgacctggcc
caggccgtggcgttgaatgacatcaagcagcaactgagccatttggtgtaccccggattt
gtccgggaaacccccgcgatgtggctcaaggagctgccgcgttacctcaaggccattgaa
ctgcgcctggagaaactgccgggccaggtgcaaaaagatcgggtgtggagcggcgaattg
agtgggctgtgggcgcagtatcaagcccgcgccaccaagcatgcgcaggaaggcaagcgc
gatccgcaactggagctgtaccgctggtggctggaagaataccgggtgtcgctgttcggc
cagcaactgggcaccaaggtgccgatttctgacaagcgcctgagcaaacagtggagccag
gtggaggcgtga
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