Candidatus Portiera aleyrodidarum BT-QVLC: PAQ_073
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Entry
PAQ_073 CDS
T02306
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
plr
Candidatus Portiera aleyrodidarum BT-QVLC
Pathway
plr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
plr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PAQ_073 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plr03021
]
PAQ_073 (rpoC)
03400 DNA repair and recombination proteins [BR:
plr03400
]
PAQ_073 (rpoC)
Enzymes [BR:
plr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PAQ_073 (rpoC)
Transcription machinery [BR:
plr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PAQ_073 (rpoC)
DNA repair and recombination proteins [BR:
plr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PAQ_073 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AFS18803
LinkDB
All DBs
Position
89897..94015
Genome browser
AA seq
1372 aa
AA seq
DB search
MKELVKKIKSKTYYEEFDAIKISLASPERIRSWSYGEVKKPETINYRTLKPERDGLFCAK
IFGPIKDYECICGKYKRMKHRGIICEKCGVEVTKTCVRRERMSHIELASPVAHIWFLKSL
PSRIGILLDMTLRDIERILYFEVFVVIEPGMTNLKKGQLLNEEKYFEALEEYGDEFNARM
GAEAIKFLLEDIELVEQLEKIRSEIKQVHSENKIKKLTKRLKLIEALKISGNKPSWMILE
VLPILPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELKAPEIIVRNEKRMLQ
EAVDALLDNGRRGRAIIGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVCPK
LRLNQCGLPKKMAIELFKPFIYSKLQRNGYAATIKAAKLLVEKEVPEVWDILADVICEHP
VLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAYNADFDGDQMAVHIPLTLESQLEA
RELMMSTNNLLSPANGEPIIVPSQDVVLGLYYMTRETCNGIGEGLIFSNINEVEIAYSNK
KVDLHSRIKVRLTDWIKDDKQKVSTQTSIRHTTVGRALLYGMLPNGMSFELINRPMKKKV
ISNLINLVYRNIGLKKAVNLADKLMYTGFKLATLSGASIGVNDFVIPTEKEHIINKAEKE
VKEIGKQYIYGLVTLGEKYNKVIEIWSKANDKVAKAMMNGISKSVVIDKSGKKVEQYSFN
SVFIMADSGSRGSAAQIRQLAGMRGLMTKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEIDCNTQEGLLMYSIIEGGDIIISITEKIL
GRILAKNILDLKGRILIKAGTLLDELWCKKIYRLGIDEVVVRSIIRCATQYGVCVMCYGR
DLSRGKLVNIGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRTLIKDNVQVKYGGIIRFH
NMKAVERIDKKLIVVSRYCAIYIIDKKGREKEYYRLPYGAELNIREGCFVDAGTTVANWD
PHTHPIISEISGYIKFIDIEEGLTMHSTVDEMTGISSIEILDLGIRPLLGRNKRPRIMLQ
DETGKDISLPGYNTPVQYILPGNALITVENGRKIGVGETISRIPVEALGNKDITGGLPRV
AELVEARKPKEYAILAEITGQILFGKETKGKRRIIINSEETGKKKEILINKGRQICVFEG
DKVEKGEVISDGPSNPHDILRLLGVEELSKYIINEIQEVYRLQGVGINDKHIEVIIRQML
RKVIIKDSGDSEFIKGDQVEVGSVLETNRKLYKLKKKIISFERILLGITKSSLSTPSFIS
AASFQETTRVLTEAAVKGSYDKLRGLKENVVVGRLIPAGTGLAYHNDRRRKI
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atgaaggagttggtaaagaaaataaaatcaaaaacatattatgaagagtttgatgcaata
aaaatttcattagcatctccagaaaggatacgatcatggtcatatggtgaggtgaaaaaa
ccagaaacaattaattatcgtacattaaaacctgagagagatggattgttttgcgcaaaa
atatttggtcctattaaagattatgaatgtatttgtggtaaatataaacgaatgaaacat
agaggaataatatgtgaaaaatgtggcgttgaggttactaaaacctgtgtacgcagagaa
agaatgagtcatattgaattagcatctcctgttgcccatatatggtttttaaaatcatta
ccaagtaggattggcattttattagatatgacgttaagagatatagaaagaattttatat
tttgaagtctttgtagtaatagaaccaggtatgacaaatttaaagaaaggtcaattatta
aatgaagaaaaatattttgaagcattagaagaatatggtgatgaatttaatgcaagaatg
ggtgcagaagctataaagtttttgttagaagacatagagttagtagaacaactagagaaa
atcagaagcgaaattaaacaagtacattcagaaaataaaataaaaaaattgactaaacgg
ttaaaattaatagaagcattaaaaatatcaggaaataaacctagttggatgattttagag
gttttacctatattacctccagatttaagacctttagtaccattggatggaggtaggttt
gcaacgtcagatttaaatgatttatataggcgtgttatcaatagaaataatagattaaaa
agattaattgaattaaaagctccagaaatcattgttcgcaatgaaaaaagaatgttacaa
gaagcagtagatgcattgttagataacggaagaagaggaagagcaattataggttcaaac
aaaagaccgttaaaatcattagcagatatgataaaaggaaaacagggaagatttcgtcaa
aacttattaggtaaacgtgtagattattcaggaaggtcggtaattacagtttgtccaaaa
ttaagattaaatcaatgtggtttacctaaaaaaatggctatagaattatttaaaccgttt
atatattcaaaattacaacgaaatggatacgcagcaactataaaagcagcaaaacttttg
gttgaaaaagaagtgccagaggtctgggacatattagctgatgtaatttgtgaacatcca
gttttgttgaatagagcccccactttacatagattgggtattcaagcgtttgaaccaatc
ttgatagaaggtaaagcaatacaattacatccattggtctgtgcagcttataatgcagat
tttgacggggatcaaatggcagtgcatatacctttaacattggaatcacaattagaagct
agagaattaatgatgtcaacaaataatttattatctccagcaaatggagaacctataatt
gtgccttcacaggatgtagttttaggtctatattatatgacaagggagacttgtaatgga
ataggtgaagggcttatcttttctaacataaacgaagtagaaatagcttatagcaataaa
aaagtggacttacattctcgtataaaggtccgtttgacagattggataaaagatgataaa
caaaaagtaagtacacagacatcaatacgacatacgactgtaggtcgtgctcttttatat
ggtatgttgccaaatggaatgagttttgaattaataaatagaccaatgaaaaaaaaagta
atatctaatttgattaatttagtttatagaaatattggattaaaaaaagctgtgaactta
gcagataaacttatgtatacaggttttaaactagctactttgtcaggtgcatcaattggc
gttaatgattttgttataccgactgaaaaagaacacataataaacaaagctgaaaaagaa
gtaaaagaaataggtaaacaatatatttatgggcttgtaactttaggagaaaaatataat
aaagttatagaaatttggtccaaagctaatgataaagttgcaaaagctatgatgaatggt
atatctaaatcagttgtgatagataaatctggaaaaaaagttgaacaatattcttttaat
agtgtttttattatggctgattcaggatccagaggaagtgcagctcaaattagacaatta
gcaggaatgcgtggcttgatgacaaaaccagatgggtctattatagaaacgcctataaca
gcaaactttcgtgaaggattaaatgttctacaatattttatatcaactcatggtgccaga
aaaggcttagcagatacagcattaaaaacagctaattcaggatatttaactagaagatta
gtagacgtagcacaagatgtcgtgatcacagaaatagactgtaatacacaagagggttta
ttaatgtattcaattatagaaggaggggatattattatctcaatcactgaaaaaatttta
ggtagaattttagcaaaaaatattttagatttaaaggggagaattttaattaaagcaggc
acactgttagatgaactatggtgtaaaaaaatttatagattaggaatagacgaggttgtt
gtacgtagtattattagatgtgcaacacaatatggtgtttgcgttatgtgttatggtagg
gatttatcaagagggaagttagtaaatattggtgaatcagtaggggtaatagctgcgcaa
tcaataggcgagccaggtactcaattaactatgcgtacatttcatataggtggagcagca
tcacgaacgttaataaaagataatgttcaagtaaaatatggtggtataataagatttcat
aatatgaaagcagtagaacgaattgataaaaagttaatagttgtgtctcgttattgtgct
atatatataatagacaaaaagggtagagaaaaagaatactatagactaccatatggtgca
gaactaaatattagagaaggatgttttgttgacgcaggtacaacagtagcaaattgggac
cctcatacacatccaataatttcagaaatatcaggttatataaagtttatcgatattgag
gaaggtttgacgatgcatagtactgtggatgaaatgaccggtatctcttcgatagaaata
ttagatttaggtattagacccctactaggaagaaataaaagaccaagaattatgttacaa
gatgaaaccggaaaagatatatcattgcctggttataacacgcctgtacaatatatttta
cctggtaatgctttgattacagtagaaaatggtagaaaaataggcgtaggggaaacaatt
tcaagaatacccgtagaagcattaggaaacaaagacataactggagggttaccccgtgtt
gcagaattggtagaggcaagaaagcctaaagaatatgcaatattggcagaaataacaggt
caaattttatttggtaaggaaacaaaaggtaaacggcgaataataataaattcagaagaa
acaggtaaaaaaaaagaaatattaattaataaaggccgtcaaatatgcgtttttgaaggg
gataaagtagagaaaggagaagtaatttctgatggcccaagtaatccacatgatatatta
cggttgttgggtgtagaggagttatcaaagtatattataaatgagatacaagaagtttat
agattacagggtgttggaataaacgataaacatattgaagttataataaggcaaatgtta
cgtaaggtaataataaaagattcaggagatagtgaatttataaaaggtgatcaagttgaa
gtaggatcagtattagaaacaaatagaaagttatataaattgaaaaaaaaaataattagt
tttgaaagaatattattaggtattactaagtcatcgttatcaacaccatcatttatttca
gcagcatcatttcaagaaacaacacgtgttttaacagaagcagcagttaaaggcagctat
gataagttaagaggtttaaaagaaaatgtcgttgtggggagattaattcctgcaggtact
ggtttagcataccacaatgaccgtcggagaaaaatttag
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