Candidatus Portiera aleyrodidarum BT-QVLC: PAQ_165
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Entry
PAQ_165 CDS
T02306
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
plr
Candidatus Portiera aleyrodidarum BT-QVLC
Pathway
plr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PAQ_165 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plr03019
]
PAQ_165 (rne)
03009 Ribosome biogenesis [BR:
plr03009
]
PAQ_165 (rne)
Enzymes [BR:
plr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PAQ_165 (rne)
Messenger RNA biogenesis [BR:
plr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PAQ_165 (rne)
Ribosome biogenesis [BR:
plr03009
]
Prokaryotic type
rRNA processing factors
PAQ_165 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AFS18886
LinkDB
All DBs
Position
195674..197308
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AA seq
544 aa
AA seq
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MKRILINASQPEELRVALVDGQLLYDLDIEYCNKEQRKSNIYRAKIIRIEQSLEAVFVDF
GAKRHGFLPIKEISKEYLLNDCNSNIREIIKEGQELIVQVEKEERSNKGAALTTYISLAG
RFLVLMPNNYRSGGISRRITGTDRFKLKEAIKKLFIPKNMGIIVRTAGIGRSSKDLQCDL
NYLIQIWEAITEEANKRSAPFLIYRESNVIIRAMRDYLRQDIGEVLIDSVYIYNDALNFI
KQVMPTYQKKIKLYKDELPLFTKFKIESQIATAYQREVKLPSGGSIFIDSTEALVSVDIN
SARATRGDDIEETALHTNLEAADEIGRQLRLRDIGGLVVIDFIDMALTRNQREVENRIRT
AFKVDRARIQLCRISRFGLMEMSRQRIRPSLRENSGIVCPRCNGQGTIREVSSLSLSILR
LIEEEAMKDNSSKIRAVLPVAIATYLLNEKRNIIVKIEVRQNVKIIIIPEQDMESPHYAV
ERLRYDQIFGEKYSNKKNLLSKKTTYMEKKIRTEKAAVSIVNHSTVTYNNFITRIWKTLI
EKLY
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaattcttataaatgcgagccaaccagaagaattaagagttgcactggtagat
gggcaattattgtatgatttagatattgaatactgtaataaagaacaaagaaaatctaat
atatatcgtgctaaaatcataagaatagaacaaagcttagaagctgtttttgttgatttt
ggagccaaaagacatggtttcttacctataaaagaaatatctaaagaatatttattaaat
gattgtaattcaaatattagagaaataattaaagaaggtcaagaattaatagtgcaagtt
gaaaaagaagaacgtagcaataaaggtgcggctttaactacttatattagtttagcaggt
agatttttagttttaatgccgaataattatagatcaggagggatttctagacggattaca
ggtactgatagatttaaattaaaagaagctataaagaaattatttatacctaagaatatg
ggaataatagttagaaccgcagggattggccgttcaagtaaagatttacaatgtgattta
aattatttaattcaaatatgggaagcaattacagaagaagcaaataaaagatcggctcca
ttcttaatatatagagaatctaacgttattattcgtgcaatgcgtgattatttaagacaa
gatataggtgaagttttaatagatagtgtatacatttataatgatgctctaaattttatt
aaacaagttatgcctacttatcaaaaaaaaataaaactttataaagatgaacttcctctt
tttactaaatttaaaatagaatctcaaattgcaactgcttatcaacgagaggttaaattg
ccttcaggtggatcaatatttatagattctacagaagctttagtatctgttgatataaat
tcggcgcgtgctactagaggtgatgatatagaagaaacagctttacatacaaatttagaa
gcagctgatgaaattggtagacagttaagattacgtgatattggtggcttagtagtaatt
gatttcatagatatggcgttaacaagaaaccaaagagaagtagaaaatagaattcgtaca
gcgtttaaagttgatcgtgcacgcattcaattatgtcgtatttcaagatttggcttaatg
gaaatgtcacgacaacgcattcgtccatctttacgggaaaacagtggtatagtatgtcca
agatgtaatggacaaggcacaatacgtgaggttagttctttgtctctttctatattacgt
ttgattgaagaagaagctatgaaggataatagttctaaaataagagcggtattgccagtg
gcaatagcaacttatctattaaatgaaaaaagaaacattatagtgaagatagaagtaaga
caaaatgtaaaaattattattattccagaacaggacatggaaagtcctcattatgcagta
gaaagattacgttatgatcaaatatttggagaaaaatatagtaataaaaagaatctttta
agtaaaaaaaccacttatatggaaaaaaaaatacgtacagaaaaagcagctgttagtatt
gtaaatcatagtactgttacatacaacaattttataacacgtatctggaaaacattaata
gagaaattatattaa
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