Planctomyces sp. SH-PL14: VT03_00165
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Entry
VT03_00165 CDS
T04354
Symbol
rnc
Name
(GenBank) Ribonuclease 3
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
pls
Planctomyces sp. SH-PL14
Brite
KEGG Orthology (KO) [BR:
pls00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
VT03_00165 (rnc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pls03019
]
VT03_00165 (rnc)
03009 Ribosome biogenesis [BR:
pls03009
]
VT03_00165 (rnc)
03036 Chromosome and associated proteins [BR:
pls03036
]
VT03_00165 (rnc)
Enzymes [BR:
pls01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
VT03_00165 (rnc)
Messenger RNA biogenesis [BR:
pls03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VT03_00165 (rnc)
Ribosome biogenesis [BR:
pls03009
]
Eukaryotic type
90S particles
RNase
VT03_00165 (rnc)
Prokaryotic type
rRNA processing factors
VT03_00165 (rnc)
Chromosome and associated proteins [BR:
pls03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
VT03_00165 (rnc)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
dsrm
RM44_endonuclase
DND1_DSRM
Motif
Other DBs
NCBI-ProteinID:
AMV16270
LinkDB
All DBs
Position
complement(39642..40484)
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AA seq
280 aa
AA seq
DB search
MSAWRMPVSFFMVPFPLTAGAFPASCRRACFAWECHMSKKDNGSPGVSPELLAECEAVLG
YEFRDKDLLYRCLTHASAAKTRLESNERLEFLGDAVLGLTICETLFTRFPANAEGELTRI
KSVVVSRASCATLARRMGLEKYLVLGRGISAHGRLPSSVIAAAIEAIIGGIYVDGGFDKA
HAIVQRLFMDDILSAAQLESGINYKSILQQSVQRQQGATPGYRVIDEKGPDHSKCFKVAA
VVKDQEFPGAWGPSKKSAEQRAAENALCVMEGAEPPHTAE
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
ttgtccgcctggcggatgccggtctccttcttcatggtcccctttcccctcactgcgggt
gcgttcccggcaagctgccggcgggcgtgcttcgcctgggaatgtcacatgtcgaagaag
gacaacggaagcccgggggtttcacccgagcttctggccgaatgcgaagctgttctcggt
tatgagtttcgcgacaaggatctgctgtaccggtgcctgacgcacgcgtcggcggccaag
acccgcttggaatcgaatgaacggctcgagtttctcggggatgcggtcctgggactgacg
atctgcgagacgctcttcacccgctttccggccaatgccgaaggggagctgactcggatc
aagtcggtcgtcgtcagccgcgcctcgtgcgccacgctggcccgccggatggggctcgaa
aagtatctcgtcctgggccgggggatctcggcgcatgggcggctcccctcttcggtgatt
gcggccgccatcgaagcgatcatcggcgggatctacgtcgacggcgggttcgacaaggcg
catgccatcgtccagcggctgttcatggacgacatcctgtccgcggcgcagctcgaatcg
gggatcaactacaaaagtattcttcagcagtcggtgcagcggcaacagggggcgacaccg
ggctaccgggtgatcgacgagaagggccccgaccactcgaagtgctttaaagtggcggca
gtcgtcaaggaccaggagttccccggagcgtggggccccagcaagaaatcggcggagcag
cgggcggctgagaacgcgctctgcgtcatggaaggggccgagccgccccataccgcggag
tag
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