Planctomyces sp. SH-PL14: VT03_00565
Help
Entry
VT03_00565 CDS
T04354
Symbol
pcrA_1
Name
(GenBank) ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pls
Planctomyces sp. SH-PL14
Pathway
pls03420
Nucleotide excision repair
pls03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pls00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VT03_00565 (pcrA_1)
03430 Mismatch repair
VT03_00565 (pcrA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pls03400
]
VT03_00565 (pcrA_1)
Enzymes [BR:
pls01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VT03_00565 (pcrA_1)
DNA repair and recombination proteins [BR:
pls03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VT03_00565 (pcrA_1)
MMR (mismatch excision repair)
Other MMR factors
VT03_00565 (pcrA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
PcrA_UvrD_tudor
AAA_11
ResIII
DUF1839
DEAD
Motif
Other DBs
NCBI-ProteinID:
AMV16348
LinkDB
All DBs
Position
141389..143686
Genome browser
AA seq
765 aa
AA seq
DB search
MSILDGLTAPQRSAVEHVDGPLLVVAGPGSGKTRVVTRRIAHMVERGISPRSILAITFTN
KAAAEMKERVETLLPESNVWVSTFHKFCVRTLRQYGPTVGLSSNFTILDDQDQKRAMRSV
VEELGIDPVTYPPDKLGYRISNLKNDLITADEYREKYLNSIGDHWQAILSKVYPGYQKYL
LEANSVDFDDLLLHVAKMLTDHEEIRSQLDARYRYILVDEYQDTNAAQYRIVQALSQRYP
NLCATGDPDQSIYGWRGARIANILRFERDFPQSKVVRLEHNFRSSAAILRSADSLIAHNS
QRKAKSLIPTRDEGTPVQLVLYSDGNGEADGIAKRIHDAVESGARKYQDFAVFYRVNALS
RTLELSLLRNRIPFQVAQGVAFYDRAEIKDMIGYLRLVYNAADRTAFLRVVNTPLRGLGE
TSQKRLMAWAEREGLTPLEACRRAKEIPRLSAKAIAGFQSFGRMMEALSLADSGSVAALI
EAIIEKTRFTSVWQASRSEQDLNRLANVQELVTAARQYDELMGEDRSLEGFLEETALVSD
TDFLDDAQGRVTLMTLHASKGLEFPEVFILGLEEGLIPHDRAIRDPQTQERQTSGHEFEE
ERRLLFVGMTRAREKLTLTHTGFRAFRGKVLTSIPSPFISEFEADRINEVTSPFANLQRQ
VEHRDELESHLEEHRARTPVGKPLEFDKKPLLTTAADLLNGTNKPAEVPRGFALGQQVRH
PRFGVGTVTQSSGLGRHKIVKVTFADTQREETFVVGKAPLQPIGT
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgattcttgatggactgaccgctccccagcgctccgccgtggagcacgtcgacggc
ccgctcctggtcgtggccggaccgggctcggggaaaacacgagtggtgacgcggcggatc
gcgcacatggtcgagcgcgggatctcgccccggagcattctggccatcaccttcacgaac
aaggcggcggccgagatgaaggagcgggtggagacgctcctgcccgagtcaaacgtctgg
gtcagcaccttccacaagttctgcgtccgcacgctgcggcagtacgggccgaccgtcgga
ctgagctccaacttcacgatcctcgatgatcaggaccagaagcgggccatgcggagcgtg
gtcgaggaactggggatcgaccccgtcacctatccgccggacaagctcggttaccggatc
agcaacctcaagaacgacctgatcacggcggacgagtaccgggaaaagtacctgaactcg
atcggcgaccactggcaggcgatcctctccaaggtctatccgggctatcagaagtacctc
ctggaggcgaacagcgtcgacttcgacgatctgctgctccacgtcgccaagatgctgacc
gaccacgaggagattcggtcccagctcgacgcccgctatcgctacatcctggtcgacgag
taccaggacacgaacgccgcgcagtaccggatcgtccaggctctttcgcagcggtatccc
aacttgtgcgccaccggggatcccgaccagtcgatctacggctggcggggggcgcggatc
gccaacatcctccgcttcgaacgcgactttccgcagtccaaagtggtccggctggagcac
aacttccggagctccgccgcgatcctccgctcggccgacagcctcatcgcccacaactcc
cagcggaaggccaagagcctgatcccgacgcgggacgaagggacgccggtccagctcgtc
ctgtactcggacggcaacggcgaggcggacgggattgcgaagcggatccacgatgcggtc
gagtccggggcccgcaagtatcaggacttcgccgtcttctaccgggtcaacgctctctcg
cggacgctggagctgtcgctgctccggaaccggatcccgtttcaggtcgcccagggggtc
gcgttctacgaccgggccgagatcaaggacatgatcggctacctgcggctggtctataac
gccgccgaccggaccgcgtttctgcgggtcgtcaacacgccgctccggggcctgggagag
acgtcccagaagcggctcatggcgtgggccgaacgcgaagggctcacaccgctggaagcc
tgccggcgggcgaaggagattccgcggctctcggccaaagccatcgccggctttcagtcg
ttcggccggatgatggaggccctgtcgctcgctgactccggttccgtcgccgcgctgatc
gaggcgatcatcgaaaagacccgcttcacctccgtctggcaggcgagccggtccgagcag
gacctgaaccggctggcgaacgttcaggaactggtgaccgccgcccgccagtacgacgag
ctgatgggagaagaccgctcgctcgaggggttcctcgaagagacagcgctcgtcagcgat
accgatttcctcgacgacgctcagggacgggtcacgctgatgacgctccacgcctccaag
gggctggagtttccagaagtgttcatcctcggtcttgaagaagggctcatcccgcatgac
cgggcgatccgcgatccacagacgcaggagcggcagacgtccggccacgagttcgaggaa
gagcggcggctgctgtttgtcgggatgacccgcgcccgggagaagcttacgctgacccac
accgggttccgggcctttcgcggcaaggtcctgacctcgatccccagcccgttcatctcg
gagttcgaggcggatcgaatcaacgaagtcacgtcgccgtttgccaatctgcagcgtcag
gtggaacaccgcgacgagctggaatcgcatctggaagaacaccgcgcccgcacgccagtc
gggaagccgctggagttcgacaagaagccgctgctgacgactgctgcggacctgctcaac
ggcacaaacaagccggccgaggttccccgggggttcgccctggggcagcaggtccggcat
ccgcggttcggcgtcggcacggtgacgcagtcgagcggcctcggccggcataagatcgtc
aaggtgacgttcgccgacacccagcgcgaggaaacgttcgttgtcggcaaagcccccctg
cagccgatcggaacctga
DBGET
integrated database retrieval system
