Planctomyces sp. SH-PL14: VT03_08400
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Entry
VT03_08400 CDS
T04354
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pls
Planctomyces sp. SH-PL14
Pathway
pls03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pls00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VT03_08400 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pls03021
]
VT03_08400 (rpoC)
03400 DNA repair and recombination proteins [BR:
pls03400
]
VT03_08400 (rpoC)
Enzymes [BR:
pls01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VT03_08400 (rpoC)
Transcription machinery [BR:
pls03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VT03_08400 (rpoC)
DNA repair and recombination proteins [BR:
pls03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VT03_08400 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
RPOC_hybrid
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AMV17900
LinkDB
All DBs
Position
complement(2133585..2137886)
Genome browser
AA seq
1433 aa
AA seq
DB search
MSTGEGVYDRVNDYGAVKITLASPHDIRSWSFGEVKKPETINYRTYRPERDGLFCERIFG
PEKDWECACGKYRGMKYKGMICDRCGVKVTHSRVRRKRMGHIELAAPVVHIWFFKSMPSR
LGALLNMKTTSLEKVIYFQDYVVTDPGDTPLRKTQMLTEEEYRQAKEKYGETAFTAEMGA
EAVFKLLTTIQLNDESKKLRAELKATGSVQKQKDLIKRLKIIEAIRDSENRPEWMVLNCV
PVIPPDLRPLVLLESGNFATSDLNDLYRRIINRNNRLKKLVDLNAPEVIVRNEKRMLQQS
VDALFDNNRCKRPVLGSSNRPLKSLTDMIKGKQGRFRENLLGKRVDYSARSVIVVGPELF
LHQCGLPKKIALELFQPFVIRRLKELGHADTIKSAKRMLERKDDEVWDILDEVIKNHPVL
LNRAPTLHRIGIQAFEPILVEGNAIKLHPLVCRGFNADFDGDQMAVHLPLSIEAQVEATT
LMMSTNNVFSPANGSPIISPSQDIVMGCYYCTVKREGQPGEGMTFGSPKEAIMAYQLGRV
SRHAVIKLRLPKDKRVKGEGAQTYKPGTVVTTTVGRVLFNDILKPSMSYYNITLKSKDLQ
NVISDTYLELGRRATIELLDRMKRLGFEESTRSGLSFGVSDLVTAPDKAKLILAAEGEVL
KKQKQFDRGIITGEERYNAVIEIWTHARESITNSMKTALEGDLREGGAYVNPIYLMAESG
ARGGMEQIRQLAGMRGLMAKPSGEIIETPIKSNFKEGLTVLEYFSSTHGARKGLADTALK
TADSGYLTRKLADICQNMVVTTHDCGTTKGVTRGVLYRGEKVEVSLAQAIRGRVSRTNIV
NPITDEVIVREGELITWDIARKIEAMGIERIQVRSPMTCEAELGICRLCYGMDLSTGAMV
EEGLAAGIIAAQSIGEPGTQLTMRTFHFGGTAQKELEDKDLKAKKAGRAKFARIRSVVNT
EGQSVVLARNGEIVIIDSKDRELEKYTIPAGAVLRVKEDDEVKVGQVLCEWDPHSVPILA
EVGGKIRLEDLIEGRTIKTETDATGNARRVVIEHKGDLHPQIIVEDATGKILDFYHIPER
AILEVTDGQQIAAGAALAKNPREATGTQDITGGLPRVTELFEARKPKEPAVVAEIDGEVE
IMQEKKRGKRVIVVHGTNNHDVEHIVPHGKQMMVHTGDRVKAGDALVRGPLVPHDILRVS
GEEAVQQYLLHEIQNVYRAQRVEIDDKHIELVVSQMLRKVRIDDVGDTDSLPGVVVDKFE
FRRINRKIQEAVKVTDPGDTEFQPGEVVPIAVIEETNAAIEADGGKPAKTAKPRPAKGST
QLLGITKAAVQSESFISAASFQETTKVLTEAALAGKSDELVGLKENVILGHLIPAGTGFK
THQSAEVRIRPEAQMEAKAEKERVLAARRELLGEIDRLEPRGDVPSLKDLAPE
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atgagcactggtgaaggcgtttacgatcgggtcaacgactacggcgcggtgaagatcacc
ctcgccagcccgcatgacatccgcagctggtccttcggcgaagtcaagaagccggaaacg
atcaactaccggacctaccgccccgagcgcgacggtctgttctgcgagcggatcttcggg
cctgagaaggactgggagtgcgcctgcggcaagtaccgcggcatgaagtacaaggggatg
atctgcgaccgctgcggcgtcaaggtcacccactcccgcgtccgccgcaagcggatgggg
cacatcgaactggcggctccggtcgttcacatctggttcttcaagagcatgcccagccgt
ctcggcgcgctgctcaacatgaagacgaccagcctcgagaaggtgatctacttccaggac
tacgtcgtcacggacccgggggacaccccgctccgcaagacgcagatgctgacggaagag
gaataccgtcaggcgaaggagaagtacggcgagaccgcgttcacggccgaaatgggtgcc
gaggcggtcttcaagctcctgacgacgattcagctcaacgacgagtcgaagaagctccgg
gccgagctgaaggcgaccggcagcgtccagaagcagaaggacctgatcaagcggctcaag
atcatcgaggcgatccgcgacagcgagaaccgtcccgagtggatggtgctcaactgcgtt
ccggtcattccgccggacctgcggccgctcgttctgctcgagtcgggcaacttcgccacg
agcgacctgaacgacctttaccgccggatcatcaaccggaacaaccggctcaagaagctg
gtcgacctcaacgctcccgaggtcatcgtccgcaacgaaaagcggatgctgcagcagtcg
gtcgacgccctgttcgacaacaaccgctgcaagcggccggtgctcggttcgtcgaaccgg
cccctcaagtcgctgaccgacatgatcaaggggaagcaggggcggttccgcgaaaacctc
ctcggtaagcgtgtcgactactctgcccggtcggtcatcgtcgtcggtcccgagctgttc
ctgcaccagtgcggtctgccgaagaagatcgccctcgaactgttccagccgttcgtgatc
cgccggctcaaggagctcggccacgccgacacgatcaagtccgccaagcggatgctcgag
cggaaggacgacgaggtctgggacattctggacgaagtcatcaagaaccatccggtgctc
ctgaaccgggccccgacgctgcaccggatcgggatccaggccttcgagccgatcctggtc
gaagggaacgcgatcaagctgcacccgctcgtctgccgcggcttcaacgccgacttcgac
ggcgaccagatggcagttcacctgccgctgtcgatcgaggcgcaggtcgaagcgaccacg
ctgatgatgtcgacgaacaacgtcttcagcccggcgaacggcagcccgatcatttcgccg
tcgcaggacatcgtgatgggttgctactactgcaccgtcaagcgcgagggccagccgggc
gaagggatgaccttcgggtcgcccaaggaagccatcatggcttaccagctcggccgggtg
tcgcggcatgcggtcatcaagctgcgtctgccgaaggacaagcgggtcaagggcgaaggg
gctcagacctacaagcccggcaccgtcgtcacgacgaccgtcggccgcgtgctgttcaac
gacatcctgaagccctcgatgtcgtactacaacatcacgctgaagagcaaggacctccag
aacgtcatctccgacacctacctggagctcggacggcgggcgacgatcgaacttctcgac
cggatgaagcggctcggcttcgaagagtcgacccggtcggggctctcgttcggcgtcagc
gacctcgtgaccgccccggacaaggcgaagctgatcctggccgccgaaggggaagtgctc
aagaagcagaagcagttcgaccgcgggattatcaccggggaagaacgctacaacgcggtc
atcgaaatctggacccacgctcgtgagtcgatcacgaactcgatgaagaccgccctggaa
ggggaccttcgcgaagggggcgcttacgtcaacccgatctacctgatggcggagtcgggt
gcccgcggtggtatggaacagatccgtcagctcgccggcatgcgaggactgatggccaag
ccgagcggcgagatcatcgagacgccgatcaagtcgaacttcaaggaaggtctgaccgtt
ctcgagtacttcagctcgacgcacggtgcccgtaagggtctcgccgataccgccctcaag
acggcggactcgggttacctgacccgtaagctggcggacatctgccagaacatggtcgtc
acgacgcacgattgcggcacgaccaagggtgtgacccgcggggtgctgtatcgcggtgaa
aaggtcgaagtcagcctggcccaggccatccgcggccgcgtcagccggaccaacatcgtc
aacccgatcacggacgaagtgatcgtccgcgaaggggagctgatcacctgggacatcgcc
cggaagatcgaggcgatggggatcgagcggatccaggtccgcagcccgatgacctgcgag
gccgagctcggcatctgccggctctgctacgggatggacctgtcgaccggtgcgatggtc
gaagaagggctcgcggcggggatcatcgccgcccagtcgatcggtgagcctggtacgcag
ctgacgatgcgaaccttccacttcgggggaaccgcccagaaggaactggaagacaaggac
ctcaaggccaagaaggccggtcgtgccaagttcgcccggatccggagcgtcgtgaacacg
gaaggtcagtcggtcgttctcgcccgaaacggcgaaatcgtgatcatcgactccaaggac
cgcgagctcgagaagtacacgattccggccggtgccgtcctccgcgtgaaggaagacgac
gaggtcaaggtcggccaggtcctgtgcgagtgggatccgcactcggttccgattctcgcc
gaagtcggcggaaagatccgcctggaagacctgatcgaaggccggacgatcaagaccgag
accgacgccaccgggaacgcccgccgcgttgtcatcgagcacaagggtgacctgcatccg
cagatcatcgtggaagacgcgacggggaagatcctcgacttctaccacatccccgagcgg
gcgatcctggaagtgaccgacggccagcagatcgcggccggtgcggctctggccaagaac
ccccgcgaagcgacgggtacgcaggacatcaccgggggtctgccccgcgtcaccgagctc
ttcgaggcccgcaagccgaaggagccggcggtcgtggcggagatcgacggcgaagtcgag
atcatgcaggagaagaaacgcggcaagcgcgtcatcgtcgtgcatggaacgaacaaccac
gacgtggagcacatcgttccgcacggtaagcagatgatggtgcacaccggcgaccgggtg
aaggcgggggatgccctcgtccgcggcccgctcgtcccgcacgacatcctgcgggtctcc
ggtgaagaggcggtccagcagtacctgctgcatgagatccagaacgtgtaccgggcgcag
cgcgtggaaatcgacgacaagcacatcgagctcgtcgtcagccagatgctccgcaaggtc
cgcatcgacgacgtgggcgacaccgactccctcccgggtgtcgtggtcgataagttcgag
ttccgccgcatcaaccggaagatccaggaggcggtcaaggtgaccgatccgggcgacacc
gagttccagccgggcgaagtggtcccgatcgccgtcatcgaggagacgaacgcggcgatc
gaagcggacggcggcaagccggccaagactgccaagccgcgtccggccaaggggtcgacg
cagctcctggggatcaccaaggcggccgttcagagcgaaagctttatctcggccgcgagc
ttccaggaaacgacgaaggtcctcacggaagcggccctggctgggaagtcggacgagctg
gtcggcctcaaggagaacgtcatcctgggtcacctgatcccggccgggaccgggttcaag
acgcaccagagcgccgaagtccggatccgtccggaggctcagatggaagccaaggcggag
aaggagcgcgttctggcggctcgccgcgagctgctgggcgagatcgatcgcctcgagccg
cggggcgatgttccgtcgctgaaggatctcgctccggagtga
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integrated database retrieval system
