Planctomyces sp. SH-PL14: VT03_08405
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Entry
VT03_08405 CDS
T04354
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pls
Planctomyces sp. SH-PL14
Pathway
pls03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pls00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VT03_08405 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pls03021
]
VT03_08405 (rpoB)
03400 DNA repair and recombination proteins [BR:
pls03400
]
VT03_08405 (rpoB)
Enzymes [BR:
pls01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VT03_08405 (rpoB)
Transcription machinery [BR:
pls03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VT03_08405 (rpoB)
DNA repair and recombination proteins [BR:
pls03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VT03_08405 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RnfC_N
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AMV17901
LinkDB
All DBs
Position
complement(2138037..2141744)
Genome browser
AA seq
1235 aa
AA seq
DB search
MAISSERILKMPEVRHFGQIQGQFDLSDLTQIQTESYARFLQFEKRPDQRKNQGLEEILR
EVFPVESYDGLHRLEYIRYELGKPRYTPTECRQLRLTYGRPFRVWLRLVKEQPIEEEVYL
GDMPIMLGGGEFIINGAERVVVSQLHRSPGVDFVKSDEPDRKGYSCRIIPERGSWIELAV
SKKETLGVRIDQSGRFSAMTLLRAMSPEYSTSTDLLKLFYKVEHVKVKAGGDDSLVGKFA
ADDIAYPSGERVGEIITEVGHRITKSNAQEIIEAGVKAVDLIGEGEDSLILSSVIEDSTN
SHEEALLKIYQRLRPGNPPQLEKAMALFKEKFFDVNRYRLGRVGRFRINRKFGQDISDEE
MTLQPLDFINSIRYLVKLRVHDQTAHVDDIDNLGNRRLRTIDELASEELRKGFLKLRRTV
QERMSMKEMENMTPRTLVNPKSVSAAIEFFFGRSELSQVVDQTNPLSMITHERRLSALGP
GGLNRKRAGFEVRDVHISHYGRICPIETPEGTNIGLISSLSIYSKVDDYGFLITPYRKVV
SGKIGEDVEWLRADEEANVIVAPADTVVENGKIAQERVLARWRNDVHWVEGKAVQYIDVA
PAQMVGISAGLIPFLEHDDANRALMGSNMQRQAVPLLVTEPPIVGTGLEDELPKYSGMVP
RAERAGKVTYVDADRVEIEGKNYPLRKYTGLNERTCLNQKPIVAVGQRVKKGEILADSAA
TRNGVLALGRNVLVAFMSWEGFNFEDAIILSERLVKEDVYTSIHIDEFDVEIRETKLGRE
EFTRDIPNVSEKALRHLDENGIVHVGTRVRPGDILVGKVTPKAKTELTPEEKLLAAIFGK
AGEDVKNESLEVPSGVEGIVIHTEKFSRRMSLSEADRKKFDQDVKKVEQVGQTAVAEAFL
AFVSEMDKVLGKHLTDDDGRELRSVTDHKFLSEYARKFPSAFETLDVRSPQKQADARKLF
KESWPTVDDAIDDADLKLNSMKRGDELPNGVLQMVKVYVSSKRQISVGDKMAGRHGNKGV
ISKVLPIEDMPYLDDGTPVDIVLNPLGVPSRMNVGQILETHLGWAASKIGYRCICPVFDG
CSPEVMAEALKEAELPEDGKVRLNDGRTGTTFEQKTTVGIIYMLKLHHLVDDKVHARATG
PYSLITQQPLGGKARFGGQRFGEMEVWALEAYGAAYILQELLTVKSDDVEGRTKIYESMV
KGENTLEAGTPASFDVLMNEIRGLCLNLQLEKAKV
NT seq
3708 nt
NT seq
+upstream
nt +downstream
nt
atggcaatctcttccgaacgcattctcaagatgccggaagttcggcactttggtcagatc
caggggcagttcgacctgtccgatctgacgcagatccagaccgagtcctacgcccggttt
ctgcagttcgagaagcgtccggatcagcggaagaaccagggcctcgaagagattctccgg
gaagtgttcccggtcgagagctatgacggcctgcaccggctcgaatacatccgttacgaa
ctcggcaaaccccgctacaccccgacggaatgccgtcagctccgcctgacctacggccgg
ccgttccgcgtctggctgcggctcgtcaaggagcagccgatcgaggaagaagtgtacctc
ggcgacatgccgatcatgctcggcggcggcgagttcatcatcaacggtgccgagcgcgtc
gttgtcagccagcttcaccgttcgcctggcgtcgacttcgtcaagagcgacgagccggac
cgcaagggatacagctgccgcatcattcccgagcgcggaagctggatcgagcttgccgtc
agcaagaaggaaacgctcggcgtccgcatcgaccagagcggccggttctcggcgatgact
ctgcttcgggccatgagccccgagtattcgacgagcacggacctcctgaagctgttctac
aaggtcgagcacgtcaaggtgaaggcggggggcgacgactcgctcgtcggcaagttcgcc
gcggacgacatcgcctatccgtcgggcgagcgggtcggtgagatcatcacggaagtcggc
caccgcatcacgaagtcgaatgcccaggagatcatcgaagccggcgtcaaggcggtcgat
ctgatcggcgaaggggaagactcgctgatcctgagctcggtgatcgaagactcgacgaac
agccacgaagaggcgctgctcaagatctaccagcggctgcggcccggcaacccgccgcag
ctcgagaaggcgatggcgctcttcaaggagaagttcttcgacgtcaaccggtaccggctc
ggccgcgtcggccggttccgcatcaaccgcaagttcggccaggacatctccgacgaggag
atgaccctccagccgctcgacttcatcaactcgatccggtacctcgtcaagctgcgggtc
cacgaccagacggcccatgtcgacgacatcgacaacctggggaaccgccgtctccgcacg
atcgacgagctcgcctcggaagagctccgcaagggtttcctgaagctccgccgcaccgtt
caggagcggatgagcatgaaggaaatggagaacatgaccccccggacgctcgtcaacccg
aagagcgtctcggcggcgatcgagttcttcttcggtcggagcgaactgtcccaggtcgtc
gaccagacgaacccgctctcgatgatcactcacgagcggcgcctgtcggccctcggtccc
ggcggtctcaaccggaagcgggcgggcttcgaagtccgcgacgtgcacatctcgcactac
ggccgcatctgcccgatcgagacgcccgaaggtacgaacatcggcctgatctcgagcctc
agcatctattccaaggtggatgactacggcttcctgatcacgccgtaccggaaggtggtg
agcggcaagatcggcgaagacgtcgagtggctgcgggcggacgaagaagcgaacgtgatc
gtggctccggccgatacggtcgtcgagaacggcaagatcgcccaggaacgcgtcctcgcc
cgctggcggaacgacgtgcactgggtggaagggaaggcggttcagtacatcgatgtcgcc
ccggcccagatggtcgggatctcggccggtctgatcccattcctcgagcacgacgacgcc
aaccgggccctgatgggttcgaacatgcaacggcaggcggtgccgctcctggtcaccgag
ccgccgatcgtcggcaccggtctcgaagacgagttgccgaagtactccgggatggttccc
cgcgccgaacgggcgggcaaggtgacctacgtcgacgcggaccgcgtcgagatcgaaggg
aagaactacccgctccgcaagtacaccggcctcaacgagcggacctgcctcaaccagaag
ccgatcgtcgccgtcggccagcgggtcaagaagggggagatcctcgccgacagtgccgcg
acccggaacggcgtgctggccctcggccggaacgtcctcgtcgccttcatgtcgtgggaa
gggttcaacttcgaagacgccatcattctgtccgagcggctcgtgaaggaagacgtctac
acgtcgatccacatcgacgagttcgacgtcgaaatccgcgagacgaagctcggccgggaa
gagttcacccgcgacatcccgaacgtcagcgagaaggcgctccgccatctcgatgagaac
gggatcgtccacgtcggaacgcgcgtccgccccggcgacatcctcgtcgggaaggtcacg
ccgaaggccaagaccgagctgacgccggaagaaaagctcctcgcggcgatcttcggcaag
gccggggaagacgtgaagaacgagtccctcgaagtcccgtcgggcgtcgaagggatcgtc
atccacaccgagaagttctcgcggcggatgagcctgtcggaagcggaccgcaagaagttc
gaccaggacgtcaagaaggtcgagcaggttggccagacggccgtggccgaagccttcctg
gcattcgtttccgagatggacaaggtccttggcaagcacctgaccgacgacgacggccgc
gagctccgctcggtgacggaccacaagttcctctccgagtacgcccgcaagttcccgtcg
gccttcgagacgctggacgtccgcagcccgcagaagcaggccgacgcccgcaagctcttc
aaggagtcgtggccgactgtcgacgacgcgatcgacgacgcggacctcaagctcaacagc
atgaagcgcggggacgaactcccgaacggcgtgctgcagatggtcaaggtctacgtctcc
tcgaagcggcagatctccgtcggggacaagatggccggacggcacgggaacaagggggtc
atctccaaggtcctgccgatcgaagacatgccgtacctcgacgacggcacgccggtcgac
atcgtcctcaacccgctgggggtgccgagccgtatgaacgtcggtcagatcctcgagacc
cacctggggtgggccgcctcgaagatcggctaccgctgtatctgcccggtgttcgacggc
tgcagcccggaagtcatggccgaggctctcaaggaagccgagctgccggaagacggaaag
gtccgcctgaacgacggccggacgggaacgacgttcgagcagaagacgaccgtcgggatc
atctacatgctcaagctgcaccacctcgtcgacgacaaggtgcacgcccgggcgaccgga
ccctactcgctcatcacccagcagccgctgggcggaaaggcccgcttcggcggtcagcgg
ttcggggagatggaagtgtgggccctcgaagcgtacggggcggcctacatcctccaggag
ctcctcaccgtcaagagcgacgacgtggaaggccggaccaagatttacgagtcgatggtc
aagggagagaacacgctggaagcgggcacccccgccagcttcgacgtgctcatgaacgaa
atccgcggcctgtgcctcaatctccagctggagaaggccaaggtctga
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integrated database retrieval system
