Planctomyces sp. SH-PL14: VT03_08550
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Entry
VT03_08550 CDS
T04354
Symbol
rpoA_1
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pls
Planctomyces sp. SH-PL14
Pathway
pls03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pls00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VT03_08550 (rpoA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pls03021
]
VT03_08550 (rpoA_1)
03400 DNA repair and recombination proteins [BR:
pls03400
]
VT03_08550 (rpoA_1)
Enzymes [BR:
pls01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VT03_08550 (rpoA_1)
Transcription machinery [BR:
pls03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VT03_08550 (rpoA_1)
DNA repair and recombination proteins [BR:
pls03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VT03_08550 (rpoA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AMV17925
UniProt:
A0A142WT97
LinkDB
All DBs
Position
complement(2165324..2166334)
Genome browser
AA seq
336 aa
AA seq
DB search
MRIRWRNLELPSRVEPDRATITGTYGLFVVEPFERGFGHTLANSLRRILLSSLEGSAITR
AKIHGVQHEFSTIPGVVEDVTDICLNLKSLVVKNHGTTTKTIRIDRHERGVVTGADVITD
DQIEIVNKDLVIATMTDDVPLQMELTVENGRGYIPAIETHEKMPELGSIPLDAAFSPVTR
VRYRVEDTRVGQRTNYDKLTLEIWTNGTVKPDMALVEAAKILRKHLNPFISYREPGPELP
PEAGLKGMLESTGYAPIDLELEEKLSMSLAELNLSVRATNCLESEGITSVRDLVQKTEDQ
LLQVRNFGETTLLEVRERLTSIGLRLGMRVPSSSTR
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgcgaattcgttggcgaaacctggagcttcccagccgtgtcgagcccgatcgggcgacg
atcacggggacctacggactgttcgtcgttgagccgttcgagcggggcttcgggcatacg
ctggcgaacagcctgcggcggatcctcctctccagcctggaagggagcgcgatcacccgc
gccaagatccacggcgtccagcacgaattcagcacgatcccgggcgttgtcgaagacgtc
acggacatctgcctgaacctgaagtcgctcgtcgtcaagaaccacggcacgaccaccaag
acgatccgcatcgaccgccatgagcggggcgttgtgaccggtgccgacgtcatcaccgac
gaccagatcgagatcgtcaacaaggacctcgtcatcgccacgatgaccgacgacgtcccg
ctgcagatggagctgacggtcgagaacggccgcggctacatcccggcgatcgaaacgcac
gagaaaatgcccgagctcggatcgattccgctcgacgctgccttctcgccggtgacccgc
gtccggtaccgggtggaagatacccgcgtcggtcagcggacgaactacgacaagctgacc
ctcgagatctggaccaacgggacggtcaagccggacatggccctcgtcgaagcggcgaag
atcctccggaagcacctcaacccgttcatcagctaccgcgagccggggccggaactgccg
ccggaagcggggctcaaggggatgctcgagtcgaccggctacgctccgatcgacctggag
ctcgaagagaagctgtcgatgtccctcgccgaactcaacctctcggtccgggcgacgaac
tgcctggaatcggaagggatcacgagcgtccgcgacctcgtccagaagaccgaagaccag
ctcctgcaggtccggaacttcggcgaaacgactctcctggaagtccgcgagcggctgacc
tcgatcggtctgcggctcggcatgcgggttcccagcagctcgacgcggtag
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