Planctomyces sp. SH-PL14: VT03_08745
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Entry
VT03_08745 CDS
T04354
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pls
Planctomyces sp. SH-PL14
Brite
KEGG Orthology (KO) [BR:
pls00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pls03032
]
VT03_08745 (topA)
03400 DNA repair and recombination proteins [BR:
pls03400
]
VT03_08745 (topA)
Enzymes [BR:
pls01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
VT03_08745 (topA)
DNA replication proteins [BR:
pls03032
]
Prokaryotic type
DNA Topoisomerases
VT03_08745 (topA)
DNA repair and recombination proteins [BR:
pls03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
VT03_08745 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AMV17964
UniProt:
A0A142WTP9
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All DBs
Position
2208919..2211558
Genome browser
AA seq
879 aa
AA seq
DB search
MAGKKKKGLVIVESPAKAKKIGGFLGKDYEVRASMGHIRDLPEKAADIPAEVKKQGWSTL
GVNVRENFAPLYIVPSGKKALVKELKGLLKDSEELILATDEDREGESIGWHLMELLEPKV
PVKRMVFSEITKDAILDALDHTRQLDMNLVRAQETRRIVDRLYGYTLSPLLWKKIRPRLS
AGRVQSVAVRVLVQRELERLAFRSGTYWDLKADLATAKSEKFAAELTALGGKRIASGKDF
DEQTGRIKAGSDVLLLDEKTAKDLQTRLQSTGWAVTAIEHRQQVRRPPPPFTTSTLQQEA
NRKLGMSARETMQTAQRLYEDGLITYMRTDSVTLSQEAISATRKRIGDSYGDSFLSPQVR
QYSTKTKNAQEAHEAIRPAGKEMKTADEQGLGGRESSLYDMIWKRTMACQMADAQLRFTT
AVITAGDAEFRATGRQIEFAGYFRAYVEGHDDPESALEDQESSLPLMQERDKLDCQKVDA
ISHETKPPARYTEATLVRKMEAEGIGRPSTYASIIGTIQDRGYVRKASNQLIPTFTALAV
NKLLENHFSNLVDYQFTAQMEQSLDDISNGQVEFVPYLSNFFLGDDGLENQVKTREEGID
PRSACTLELDGLTSAVRVGKFGPYLEKKEGEATVTASLPDDISPADLNDEMATKLLETKK
QGPQALGMHPDEGVPVLVLIGPFGPYVQLGEVTDENPKPKRVSIPRGTAVESVDLDMALK
LLTLPRTLGEHPVNGKPVLAGIGRFGPYVQNEKTYKSLQKTDDVLTVGFDRALELLSQAR
VKTGPTPIRELGKHPEDEEPVNVYEGRYGQYVKHGDVNATIPKDKTAESITLEEAIALLK
EREASGKPSKKKKVAKKKAAPKAAKKKSPKKKPKSGEAE
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
gtggcaggcaagaagaaaaagggactggtgatcgtcgagtctcccgcgaaggccaagaag
attggcggcttcctggggaaggactacgaagtccgcgccagcatggggcacatccgcgac
ctccccgagaaggcggccgacatcccggcggaggtcaagaagcagggatggtccaccctg
ggggtgaacgtccgtgagaacttcgctcctctttatattgtccccagcgggaagaaggcc
ctcgtcaaggaactgaaggggctgctcaaggactccgaagaactcatcctcgcgaccgac
gaagaccgcgaaggagagagcatcggctggcacctcatggagctcctcgagcccaaggtc
ccggtcaagcggatggtgttctccgaaatcacgaaggacgcgatcctcgacgcgctcgac
cacacccgccagctcgacatgaacctggtccgggcccaggagacgcggcggatcgtcgac
cgcctctacggctacaccctgagccccctcctctggaagaagatccgtccgcggctctcc
gccggccgggtccagagcgtcgcggtccgggttctcgtccagcgcgagctggagcggctc
gcgttccgcagcggtacctactgggacctgaaggccgacctggcgaccgccaagagcgaa
aagttcgcggcggagctgaccgccctcggcgggaagcggatcgccagcgggaaggacttc
gacgagcagaccggccggatcaaggcggggtcggacgtcctgctcctcgacgagaagacg
gccaaggacctccagacccggctgcagtcgaccggctgggcggtgaccgccatcgagcac
cgccagcaggtccgccgccctcccccgcccttcacgacgagtaccctccagcaggaggcg
aaccgcaagctcggcatgtcggcccgggagacaatgcagaccgcccagcggctgtacgaa
gacggcctcatcacctacatgcgtaccgacagcgtgaccctctcccaggaggcgatctcg
gcgacgcggaagcggatcggcgacagctacggcgacagcttcctgagtccgcaggtccgg
cagtacagcaccaagaccaagaacgcccaggaggcccacgaggcgatccgtcccgcgggc
aaggagatgaagaccgccgacgagcaggggctcggcgggcgggagagctcgctgtacgac
atgatctggaagcggacgatggcttgccagatggccgacgcccagctccggttcacgact
gcggtcatcaccgccggcgacgcggagttccgcgcgaccggccggcagatcgagttcgcc
ggttacttccgggcctacgttgaagggcatgacgatccggagtccgccctcgaagaccag
gagtcgtcgctccccctgatgcaggagcgggacaagctcgactgccagaaggtcgacgcg
atcagccacgagacgaagccccccgcccgctacacggaggcgacgctcgtccggaagatg
gaagcggaggggatcggccgccccagtacgtacgccagcatcatcgggacgatccaggac
cgggggtacgtccgcaaggcgagcaaccagctcatcccgacgttcacggcgctggcggtc
aacaagctcctcgagaaccacttctcgaacctggtcgactaccagttcacggcccagatg
gagcagtcgctggacgacatctcaaacgggcaggtcgagttcgtcccgtacctctcgaac
ttcttcctcggggacgacggtctcgagaaccaggtgaagacccgcgaggaggggatcgat
ccccgctccgcctgcaccctggagctggacgggctgacctccgcggtccgggtcgggaag
ttcgggccgtacctcgaaaagaaggaaggggaagcgaccgtcaccgcctcgctgccggac
gacatctcgcccgccgacctcaacgacgagatggcgacgaagctcctcgaaacgaagaag
caggggccgcaggcgctggggatgcacccggacgaaggggtgccggtcctggtcctgatc
gggcccttcggtccgtacgtgcagctcggcgaagtgaccgacgagaaccccaagccgaag
cgggtttcgattccgcgcgggacggcggtggagtcggtcgacctcgacatggccctcaag
ctgctgaccctgccgcggacgctgggcgagcacccggtcaacgggaagccggtcctcgcc
gggatcgggcggttcggtccgtacgtgcagaacgagaagacgtacaagtcgctccagaag
acggacgacgtcctgacggtcggtttcgaccgggcgctggagctcttgagccaggcccgc
gtgaagacgggaccgacgccgatccgcgagctcggcaagcatcccgaggacgaggagccg
gtcaacgtctatgaggggcggtacggccagtacgtgaagcacggggatgtgaacgcgacg
atcccgaaggacaagacggcggagtcgatcacgctggaagaggcgatcgctctgctgaag
gagcgggaggcatcgggcaagccgtccaagaagaagaaggtcgcgaagaagaaggcggct
ccgaaggcggcgaagaagaagtcccccaagaagaagcccaagtccggcgaagccgaataa
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