KEGG   Planctomyces sp. SH-PL14: VT03_11390
Entry
VT03_11390        CDS       T04354                                 
Symbol
cshB
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshB
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
pls  Planctomyces sp. SH-PL14
Brite
KEGG Orthology (KO) [BR:pls00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pls03400]
    VT03_11390 (cshB)
Enzymes [BR:pls01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     VT03_11390 (cshB)
    5.6.2.6  RNA 3'-5' helicase
     VT03_11390 (cshB)
DNA repair and recombination proteins [BR:pls03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    VT03_11390 (cshB)
SSDB
Motif
Pfam: DEAD_assoc DEAD WH_Lhr WH4_Lhr Helicase_C ResIII WH3_Lhr Spike_JR1
Other DBs
NCBI-ProteinID: AMV18487
UniProt: A0A142WUN8
LinkDB
Position
2892232..2896959
AA seq 1575 aa
MDGFSFHPVIREWFQRRFRNPTDPQAQGWPHIAAGKHTLIAAPTGSGKTLTAFLAVIDRL
FREAAEGNPADEVEDDEAEESLAAEPKPGIRVIYVSPLRALSNDMQKNLEQPLQEIYAEA
AAQGLNVPPIRVGLRTGDTPSHKRAAIVKNPPQILVTTPESLYLMLTSERAREVLRSVDT
LIVDEIHALVRDKRGSHLSLSVERLAALTNRPLQRIGLSATQKPIERMAEFLIGARPAET
PPTEPLPCAIVDVGHQRELDLAIEVPPSELSAVCSHEQWAEVNARIVELINTHRSTLIFV
NTRRMAERVTYQLTQLLGDEAVGSHHGSLAADIRLSTEQKLKNGELKAVVATASLELGID
VGYIDLVIQLGSPRSIATFLQRIGRSGHALGLVPKGRLFALTRDEVLECMGLIRAIRAGR
LDVIPIPESPADVLAQQIVAEVAAREWSTDELFDLTRRAYPYRDLPREQFDKILTFLSEG
LTTGAGRGTTLLHHDQVNRRLRSRAGSRINATTNGGAIPEVDQIRVVLDQEQTVVGSVDE
EFGIESQAGDIFLLGNTSWRILALRGNDLIVGDAQGAPPTIPFWRGEAPGRTIELSEEIS
ALREQLETRIREALPAAGLPSSDDETAAPWAPPAALVRWLVDETHCTPHAAGQMVEYVAA
QQAAVGLVPTQTRVIFERFFDESGGMQLVVHAPFGSRINRAWGLAMRKRFCRSFDFELQA
TADDDGFILSLGPQHSFPIESLFPMMRTDNARNLLEQAILAVPMFQLRWRWNATRALQVS
RMRNGKKVPPALQRFRSDDLLTAVFPKLTGCQENIVGDHEIPDHPLVQQTMEDCLHEALD
LDGLLDVLGKVESGAITFVARDTREPSPFAYELLNSNPYAFLDGGEVQERRARTAQTRRS
VSVESARDLGRLDPAAIAQVIEEARPLIRNADDLHDVLQSRIFVPLPELVSTLRSPPQLL
APIEWVPLADRLIEDGRAARVTLPSGLQGWTCAERWPALRAIFPEALAEPPLTAPASVRH
DWTDVEARLTLIRGAMEIAGPVTAHELAGVMGLAENEVFACLEALEGEGIVLRGRFRNGS
AYDPAGDPRATDVEWCHRRLLSRIHRKTVAGLRREIEPVDVPTFMRFLFQHQCVLPGARR
KESTGAFDAIVQLQGMDIPAVAWERDILPARVENYRREWLDELCLTGEVGWTRLHPPGRD
PEKARPMASLTRVAPISLFLREDLGWLMTGAEPCPRDSLSTPAQELVEHLERGGAMFATD
LLSATRMLPAQLDDALGELVARGVVTSDGFSGLRALVREGSSESGAARTGPKVVRHRRAS
STGRWTLVPTRLATEMPEPTPDERRTFVEEWAWQLLRRWGVVFKDLLTREQGTPAWWELV
QHFRRLEARGEIRGGRFIQGVAGEQFALSDTVRTLRDLREAPAKGDAVSPAVAISAADPL
NLVGILTDHARVPSTAGNRILYWHGRPVAHLIGGECTIYPDCPPEAIPIVRQRFELRVAG
PAPSPVPLREDVPTPSPASDSAAPAQKPPAAEDQKDQKDQKNQKNQKKRAPARVLLRPAS
NQRMFPSGAPRPRFS
NT seq 4728 nt   +upstreamnt  +downstreamnt
atggacggattctcctttcatcccgtgatccgggagtggtttcagcggcggttccggaat
ccgacagacccgcaggcccagggctggccgcacatcgccgcgggaaagcacacgctgatc
gccgccccgaccgggagcggcaagaccctgacggcgttcctggcggtcatcgaccgcctc
ttccgcgaagctgccgaggggaatcccgcggatgaagtcgaggacgacgaagccgaggag
agcctcgccgcggaaccgaagcccggcatccgggtcatctacgtctcccctctccgggct
ctctcgaacgacatgcagaagaacctggagcaaccgctccaggagatctatgccgaagcg
gccgcgcaaggcctgaatgtccctccgatccgggtcggcttgcggaccggcgataccccc
tcgcacaagcgggcggcgatcgtcaagaacccgccgcagatcctggtgacgactcccgag
tcgctgtacctgatgctcaccagcgagcgggcgcgagaggtcctgcggagcgtcgacacc
ctgatcgtcgacgaaatccacgcccttgtccgcgacaaacggggctcgcacctctcgctg
tcggtggagcgcctcgcggccctgacgaacagaccgctccagcggatcggcctctcggcg
acgcagaagccgatcgagcggatggcggagttcctcatcggcgcccggccggccgagacg
ccgccgaccgagcctctgccttgtgcgatcgtcgatgtcggccatcagcgggagctggat
ctggcgatcgaggtcccgccgtcggagctcagcgccgtctgctcgcacgagcagtgggcg
gaggtcaacgcccggatcgtcgagctcatcaacacccaccgcagcactctgatcttcgtc
aacacgcggcggatggcggagcgggtcacctatcagctcacgcagcttctgggtgacgaa
gcggtcggcagccaccacggctcgctggcggcggacatccggctctcgacggaacagaaa
ctcaagaacggcgagctcaaggcggtcgtggcgacggcgtccctcgagctcgggatcgac
gtcggctacatcgacctcgtgatccagctcggctctccgcgttcgatcgccaccttcctg
cagcggatcggccgctccgggcacgccctcggcctcgtccccaaggggcggctgttcgct
ctgacgcgcgacgaagtcctggagtgcatggggctgatccgcgccatccgcgccggccgg
ctcgacgtcatcccgatcccggaatccccggccgatgtcctggcccagcagatcgtcgcc
gaagtcgcggcccgggagtggtccaccgacgaactgttcgacctcacccgccgggcgtac
ccctatcgcgatctcccccgcgagcagttcgacaagatcctgacgttcctcagcgaaggg
ctcacgaccggagccggccgcggaacgacgctgctgcatcacgatcaggtcaatcgccgc
ctccgatcgcgggccggatcccggatcaacgccaccacgaacggcggggcgattccggaa
gtcgaccagatccgcgtcgtcctcgaccaggagcagacagtcgtcggctcggtcgacgaa
gagttcggcatcgagagccaggccggcgacatctttctgctcgggaacacgtcgtggcgg
atcctcgctctgcgggggaatgacctgatcgtcggcgacgcccaaggcgccccgccgacg
atcccgttctggcgcggcgaagctcccggccggacgatcgagctctcggaggagatttcc
gcgctccgagagcagttggagacgcggattcgcgaagccctccccgccgccgggctgccg
agctcagacgacgaaaccgccgccccctgggcgccccccgccgctctcgtgcggtggctg
gtcgacgaaacgcactgcaccccgcacgccgcgggacagatggtcgagtatgttgcggcc
cagcaggcggcggtcggactcgtcccgacgcagacgcgggtgatcttcgagcggttcttt
gacgagtccggcgggatgcagctcgtcgttcatgccccgttcggcagccggatcaaccgc
gcgtggggcctcgcgatgcggaagcggttctgccgctcgttcgacttcgagctccaggcg
accgcggacgacgacggcttcatcctctcgctcggcccgcagcacagttttccgatcgag
agcctcttcccgatgatgcggaccgacaacgcccgcaacctcctcgagcaggcgatcctg
gcggtcccgatgttccagttgcggtggcggtggaacgcaacccgggccctgcaggtgtcc
cggatgcggaacggcaagaaggttccgcccgctctgcagcggttccgctcagacgacctg
ctgacggcggtcttccccaagctgaccggctgccaggagaacatcgtcggcgaccacgag
atccccgaccacccgctcgtccagcagaccatggaggactgcctccacgaggcgctcgat
ctcgacggtctcctcgatgttctcgggaaagtcgaaagcggcgcgatcacgttcgtcgcc
cgcgacacgcgcgagccttcgccgttcgcctacgagctgctgaactcgaacccctacgcc
ttcctcgacgggggcgaagtccaggagcggcgggcccgcaccgcgcagacgcggcggtcg
gtctcggtcgagagcgcccgcgacctgggccgcctcgatccggccgccatcgcccaggtg
atcgaggaagcccggccgctcatccgcaacgcggacgacctgcacgacgtcctgcagagc
cggatcttcgttccgcttccggagctcgtctcgacgctccgcagtcccccgcagcttctc
gcccccatcgagtgggtcccgctggcggaccgcctgatcgaagacggacgggcggccagg
gtcacgctcccctcgggcctgcaagggtggacctgcgccgagcgctggccggcgctgcgg
gcgatcttcccggaggcgctcgcggaaccgccgctcaccgcaccggcctcggtccggcac
gactggaccgacgtcgaagcgaggctgacgctcatccgcggggcgatggagatcgccgga
ccggtcacggcgcacgagctcgccggcgtcatggggctcgcggagaacgaggtcttcgcc
tgcctcgaagcgctcgaaggagaagggatcgtcctgcggggccggttccgcaacggctcc
gcctatgatcccgccggcgatccgcgggcgacggatgtcgagtggtgccatcgccggctc
ctttcccgcatccaccgcaagaccgtcgcggggctccgccgcgagatcgagccggtggac
gtcccgacctttatgcggttcctgttccagcaccagtgcgtgctgccgggggcgcggagg
aaggaatcgacgggggcttttgacgcgatcgtccagcttcaggggatggatatcccggcg
gtcgcctgggagcgggacatccttcccgcgcgagtcgagaactaccgccgcgaatggctc
gacgaactatgtctcacgggggaagtcggctggacccggctccacccgccgggccgcgat
ccggagaaggcccggccgatggcgagcctgacccgggtcgccccgatctcgctcttcctc
cgcgaagacctcggctggctgatgaccggcgcggagccttgcccccgcgactcgctcagc
acccccgctcaagagctcgtcgagcacctggagcgcggcggagcgatgttcgccaccgat
cttctttcggcgacccggatgctccccgctcagctcgacgacgcgctcggcgagctcgtg
gcccgcggcgtcgtcacctccgacggtttctcgggactccgcgcgcttgtgcgggaaggc
tcgtccgagtccggggccgccaggaccggccccaaggtcgtgcggcaccgccgcgcttcc
tcgaccggccgctggacgctcgtcccgacccgcctcgcgaccgagatgccggagccaacg
cccgatgagcggcggacctttgtcgaagagtgggcctggcagcttctccgccgctggggc
gtggtcttcaaggacctactcacccgggagcagggaacccctgcatggtgggagctggtg
cagcacttccgccgccttgaggcccgcggggagatccgcggcgggcggttcattcagggg
gtggcgggcgagcagttcgcgctctcggatacggtccggacgctccgcgacctgcgcgag
gccccggccaaaggggatgccgtctctcccgcggttgcgatctcggccgccgatccgctc
aatctcgtcgggatcctgaccgaccacgctcgggttcccagcacggctgggaaccggatt
ctctattggcacggcaggccggtggctcatctcatcggcggcgagtgcacgatctacccg
gactgtccgccggaagcgattccgatcgtccggcagcggttcgagctccgcgtcgccggg
ccggcaccctcgccggtgccactgcgggaggacgttccgacgccgagtccggccagcgat
tctgcggccccggctcagaaaccgccagccgccgaagatcagaaggatcagaaggatcag
aagaatcagaagaatcagaagaagcgcgccccggcccgcgtcctcctgcggccggcctcc
aatcagcgaatgtttccctcgggagcgccgcggccacggttctcgtag

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