Planctomyces sp. SH-PL14: VT03_11480
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Entry
VT03_11480 CDS
T04354
Symbol
sigA_1
Name
(GenBank) RNA polymerase sigma factor SigA
KO
K03086
RNA polymerase primary sigma factor
Organism
pls
Planctomyces sp. SH-PL14
Pathway
pls02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pls00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
VT03_11480 (sigA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pls03021
]
VT03_11480 (sigA_1)
Transcription machinery [BR:
pls03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
VT03_11480 (sigA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Flagellin_N
LRIM1_dimer
MazG
PRA-PH
TINF2_N
MTR4_beta-barrel
Sec20
Exonuc_VII_L
Ub-Mut7C
HTH_15
Csm1_N
HTH_20
NACHT_N
UPF0242
Motif
Other DBs
NCBI-ProteinID:
AMV18505
UniProt:
A0A142WUW1
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All DBs
Position
2918475..2920127
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AA seq
550 aa
AA seq
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MHLFDDGLRQLLEIGKRQGFLTFTQINTYIPDEAVSPEKLDELLMLLEEMGLRVQDDLKE
RRTEPAPPKKGAKNAKAPPKIKTSDEGRRIEDPVRMYLTQMGEIPLLTRHEEISLAKTIE
VTRKRFRRQLLESDFAARQTIDVLTKVNDGELPFDRTIKVSLTEGMEKDQILGRMPLNLK
TLQHLLSLNEQDFTKLLDETTPAAERKQIEERLAMRRRKMATLVEEMSIRTQRLQPMTKR
LEQINERMQELRDQIDHLKRFKTQKDDRANLQRELNDLMFQTLETPESLQKRMEEITERY
YVYDKAMRDLSGGNLRLVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKYEYRRGYKFST
YATWWIRQAITRAIADQARTIRIPVHMIETMSKLRRVSRALVQELGREPTVDELAEAAGV
PLDEARRVLKISKHPVSLDRPVGEGDDSYFGDFIPDESTDSPVTTAAQEMLKDKIDVVLK
TLTYREREIIKLRYGLGDGYTYTLEEVGRIFKVTRERVRQIEAKAVRKLQHPVRSKQLKG
FLDRLASAGT
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgcatcttttcgatgatggtcttcgtcagcttctggaaatcggcaagcgtcagggattc
ctgaccttcacgcagatcaacacctatatcccggacgaggcagtcagcccggaaaagctc
gatgagctgctgatgctcttggaggagatgggcctccgcgttcaggacgatctcaaggaa
cgccgcaccgagcccgccccgccgaagaagggggcgaagaacgccaaggctccgccgaag
atcaagacctcggacgaaggccggcggatcgaagacccggtgcgtatgtatctcacccag
atgggcgagatcccgctgctgacccgccacgaggaaatctccctcgccaagacgatcgaa
gtcacccgcaagcggttccgccggcagctcctcgagagcgacttcgcggcccgccagacg
atcgacgtcctgacaaaggtcaacgacggcgagctgccgttcgaccggacgatcaaggtc
tcgctgaccgaggggatggagaaggaccagattctcggccgcatgccgctgaacctgaag
accctccagcacctcctgtcgctgaacgagcaggacttcacgaagctcctcgacgagacg
acccccgccgccgagcggaagcagatcgaggaacgcctcgcgatgcgtcgccgcaagatg
gcgaccctcgtcgaagaaatgagcatccgcacgcagcggctgcagccgatgacgaagcgg
ctcgaacagatcaacgagcggatgcaggagctgcgggaccagatcgaccacctgaagcgg
ttcaagacgcagaaggacgatcgggccaacctgcagcgcgagctgaacgacctgatgttc
cagacgctggagactcccgagtctctgcagaagcggatggaagagatcaccgagcggtac
tacgtctacgacaaggcgatgcgggacctctcgggcggtaacctccgcctcgtggtctcg
atcgccaagaagtaccgcaaccgcggcctctcgttcctcgacctgattcaggaagggaac
accggcctgatgcgggcggtcgacaagtacgagtaccgccgcggctacaagttctcgacc
tacgccacgtggtggatccgtcaggcgatcacccgggccattgccgaccaggcccgcacg
atccgcatcccggtccacatgatcgagacgatgtcgaagctccgccgggtgagccgggcg
ctcgtccaggaactcggccgcgagccgaccgtggacgaactggccgaagcggccggcgtc
ccgctcgacgaagcccgccgggtcctcaagatctcgaagcaccccgtcagcctcgaccgc
ccggtcggtgaaggggacgacagctacttcggcgacttcatcccggacgagagcaccgac
agcccggtgacgaccgccgcccaggagatgctgaaggacaagatcgacgtcgtcctcaag
accctgacctatcgcgagcgggagatcatcaagctccgctacggcctgggagacggctac
acctacacgctggaagaagtcggccggatcttcaaggtgacgcgggaacgcgtccgccag
atcgaagccaaggcggtgcggaagctccagcacccggtccgcagcaagcagctcaaggga
ttcctcgaccgtctggcctcggccggaacgtga
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