Planctomyces sp. SH-PL14: VT03_14625
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Entry
VT03_14625 CDS
T04354
Symbol
sigA_2
Name
(GenBank) RNA polymerase sigma factor SigA
KO
K03086
RNA polymerase primary sigma factor
Organism
pls
Planctomyces sp. SH-PL14
Pathway
pls02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pls00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
VT03_14625 (sigA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pls03021
]
VT03_14625 (sigA_2)
Transcription machinery [BR:
pls03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
VT03_14625 (sigA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
ANAPC16
HTH_Crp_2
Motif
Other DBs
NCBI-ProteinID:
AMV19122
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Position
3731353..3733077
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AA seq
574 aa
AA seq
DB search
MHRYDPALKALMDQAQARGFLTYQMVDEYLPDEGGDVSMVEHIIHALEETELPLINDPSA
PRTIADKTRQEQQAKEGTPLPSDIVKALIEPESPMSSRDPIRMYLSQMGNIPLLNREDEI
FLAKEIEITRKRYRRKLMESDYALVTAYDILQKVNSQELPFERTLRTSDTENTHKDQILG
RMPGNLKTIGQLLEQNAADWVIIQDEQSGKKEKQAARDRMVIRRRKLCTLTEELSVRTHR
LTPIFKKMEQMAQRMAEIERALHHFRHRPAAAKEVAKMQVEMAEYVELVREQPAEFIARM
NEVRARFDAWTDAKQQLSGGNLRLVVSIAKKYRNRGLSFLDLIQEGNAGLMRGVEKYEYR
RGYKFSTYATWWIRQAITRAVADHARTIRIPVHMFQSISTLKAKSEEIRQNTGREPTTEE
LAEAVGLSVEETERIMKTWKHPISLDTPVGESEDSSYGDFLEDHSESTPADSAMHQMLRD
KINHVLKSLTYREREIIKLRYGLGDGYSYTLEETGRIFKVTRERIRQIESKALRKLQHST
RAEHLKGFVEAAYTDGPMPMVEEESDVDAEPVEV
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
gtgcatcgttacgaccccgccctcaaggcactgatggatcaggcccaggcccgtggtttt
ctgacctaccagatggtggatgagtacctccctgatgaagggggcgacgtctcgatggtc
gagcacatcatccacgctctcgaagagaccgaactcccgctcatcaacgacccctccgcc
ccccggaccatcgccgacaagactcgccaggagcagcaggccaaggaagggacgcccctt
ccttccgatatcgtcaaggcgctgatcgagcccgaatcgccgatgtcctcgcgcgatccg
atccgcatgtacctgagccagatggggaacatcccgctgctcaaccgcgaagacgagatc
ttcctggcgaaggaaatcgagatcacccgcaagcggtatcgccgcaagctgatggagtcc
gattacgcgctcgtcacggcgtacgacattctccagaaggtcaacagccaggagctcccg
ttcgagcggaccctgcggacctccgacaccgagaacacgcacaaggaccagatcctgggc
cgcatgcccgggaacctgaagacgatcggccagcttctcgagcagaacgccgccgactgg
gtcatcatccaggacgagcagtccggcaagaaggaaaagcaggcggcccgtgaccggatg
gtgatccgtcgccgcaagctctgcacgctgaccgaagaactctccgttcgtacgcaccgc
ctgacccccatcttcaagaagatggagcagatggcgcagcggatggccgagatcgaacgc
gctctgcatcacttccgtcaccggccggcggccgccaaggaagtggcgaagatgcaggtc
gagatggcggaatacgtcgagctggtccgcgagcagccggccgagttcattgcccgcatg
aacgaagtccgggctcggtttgacgcctggaccgatgcgaagcagcagctctcgggcgga
aacctgcggctcgtggtctcgatcgccaagaagtatcgcaaccgcggtctgtcgttcctc
gacctgatccaggaggggaacgcgggcctgatgcgcggcgtcgagaagtacgagtaccgt
cgcggctacaagttctcgacgtacgcgacgtggtggatccggcaggcgatcacgcgggcg
gtcgcagaccatgcccggacgatccgcatcccggtccacatgttccagagcatttcgacg
ctgaaggcgaagagcgaagagatccgtcagaacaccggccgcgagccgacgacggaagag
ctggccgaagcggtcggtctgtcggttgaggaaaccgaacggatcatgaagacctggaag
cacccgatcagcctcgacacgccggtgggcgagagcgaggactcgagctacggggacttc
ctggaagaccacagcgagagcacgccagccgactcggcgatgcatcagatgctgcgggac
aagatcaaccatgtcctgaagagcctgacctatcgcgagcgggagatcatcaagctccgt
tacgggctgggtgacggctactcctacacgctcgaagagacgggtcggatcttcaaggtg
acgcgtgagcggatccggcagatcgagtcgaaggcgctccgcaagctgcagcacagcacg
cgggccgagcacctgaagggctttgtggaagccgcctacacggacggcccgatgccgatg
gtggaagaggagtcggacgtcgacgcggaaccggtcgaagtctga
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