Planctomyces sp. SH-PL14: VT03_16945
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Entry
VT03_16945 CDS
T04354
Symbol
ykoV_1
Name
(GenBank) putative DNA repair protein YkoV
KO
K10979
DNA end-binding protein Ku
Organism
pls
Planctomyces sp. SH-PL14
Pathway
pls03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pls00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
VT03_16945 (ykoV_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pls03400
]
VT03_16945 (ykoV_1)
DNA repair and recombination proteins [BR:
pls03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
VT03_16945 (ykoV_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
Motif
Other DBs
NCBI-ProteinID:
AMV19585
UniProt:
A0A142WY31
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All DBs
Position
4345214..4346131
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AA seq
305 aa
AA seq
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MARKKSSRTTKKTTKKKPSGPRASWRGTVQLGLVTFEVNAINAHAPQEDRVSFHQLHKEC
HSRIRYQKVCPVHGPVEQDEIVSGYEYSKGKYVEIDADELEALSSREDRSLTIDAFISPD
EIDPIHFDGRMYYLSPSTDAAREPYRIFLKAMKKKDRWGVGQVIWSGREQLVVLRPYEDA
LHMAMLNYEAEIRDPADTITPLPTTAPPARSVRLAEQLIDSWSDDKFNLAAYHNEYYEKV
SGIIDDKVKGRETVEPEVEEKPEVINLMDALKKSMEHTVHRRRPATSTPRRTTHPRSNRY
RSSGR
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atggcccgcaagaaaagctcccgcacgaccaagaagacgacaaagaaaaaaccctccggc
ccacgggccagctggcgggggacggtccagctcggccttgtgacgtttgaggtcaacgcc
atcaacgcccacgccccgcaggaggaccgcgtctccttccaccagctccacaaggagtgc
cacagccgcatccgctatcagaaggtctgccccgtccacggccccgtcgagcaggatgag
atcgtgagcggctacgagtacagcaaggggaagtacgtcgagatcgacgccgacgagctc
gaagccctcagctcccgcgaggatcgctcgctcaccatcgacgccttcatctccccggac
gaaatcgacccgatccacttcgacggccggatgtactacctctctccgtcgaccgacgcc
gcccgcgagccgtaccgcatctttctcaaggcgatgaaaaagaaggaccgctggggtgtc
ggccaggtgatctggtccggccgcgaacagctcgtcgtcctccgcccctacgaggacgcc
ctccatatggcgatgctgaactacgaggccgagatccgcgaccccgcggacacgatcacg
cccctccccaccacggcgccgcccgcccgcagcgtccgcctggcggagcagctcatcgac
tcctggagcgacgacaagttcaacctcgccgcgtaccacaacgagtactacgagaaggtg
agcggcatcatcgacgacaaggtcaaagggcgggagacggtcgagcccgaggtcgaagag
aagcccgaggtcatcaacctcatggacgcccttaagaagagcatggagcacaccgtccat
cgccgccgcccggcgacttccaccccccgtcgtaccacgcatccccggtcgaatcgctat
cgttcgagtggtcgctga
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