Planctomyces sp. SH-PL14: VT03_18105
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Entry
VT03_18105 CDS
T04354
Symbol
rnd
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pls
Planctomyces sp. SH-PL14
Brite
KEGG Orthology (KO) [BR:
pls00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pls03016
]
VT03_18105 (rnd)
Enzymes [BR:
pls01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
VT03_18105 (rnd)
Transfer RNA biogenesis [BR:
pls03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
VT03_18105 (rnd)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
AMV19817
UniProt:
A0A142WYG6
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All DBs
Position
complement(4646929..4648119)
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AA seq
396 aa
AA seq
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MPSRLITEQNEFDDFCARIREAGIVGFDTEFVSEFYFQPKLCLLQFALPDESHLVDPFEV
EDLSAWWSIMADQTTTIVCHGGREELRFCLRYAGAPPGKFVDVQVAEGLLSRGFPVSYKN
LVAKVMNVKVHSSETRTNWEHRPLTQRQVDYAVEDVSFLLEIWNRQQKSLKKQGRMAWAE
AEFDRMVADVSREQDREGWRKLPGVQGLRPRDQAVARALYHWRINTAQKLDKPPRTVFRD
DMLMEVAKRQPATLHELNMTRGMQRKDYQRFGTDLLDSVQAALDLPEEDLPKPDRAKAYP
ASDDALSRLLSLALSNRCAEMSVSMSLVGNAADVENLVHWHIHHRQSAKHLPKLLQGWRG
EVCGTLLSDVLDGKLTLRVADPRSDAPLRFEPYKPS
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgccctcgcggctcattaccgagcaaaacgaattcgacgacttctgcgcccgcatccgc
gaagcgggcatcgtcggatttgatacggagttcgtctccgagttctatttccagcccaag
ctctgcctgctgcagttcgcgctgccggacgagtcgcacctcgtcgacccgttcgaggtc
gaggatctctcggcctggtggtcgatcatggccgaccagacgacgacgatcgtctgccac
ggcgggcgggaggaactgcggttctgcctgcggtacgccggggcgcctccggggaagttc
gtcgacgtgcaggtggccgaggggctgctgagccgtggtttcccggtctcgtacaagaac
ctggtcgccaaggtgatgaacgtcaaggtgcacagttccgagacccggacgaactgggag
caccggccgctgacgcagcgacaggtcgactacgcggtcgaggacgtctcgttcctcctt
gagatctggaaccggcagcagaagtccctcaagaagcaggggcggatggcgtgggcggag
gcggagttcgaccggatggtggcggatgtctcccgcgagcaggaccgcgagggatggcgg
aagctccccggcgtgcaggggctgcggccgcgcgatcaggcggtcgcccgggcgctgtac
cactggcggatcaacacggcgcagaagctcgacaagcctccgcggaccgtcttccgcgac
gacatgctgatggaggtcgccaagcggcagccggcgacgctgcatgagctcaatatgacc
cgcggcatgcagcggaaggattaccagcggttcggaacggaccttctggactcggttcag
gcggcgctcgatcttccggaggaggatctgccgaagccggaccgggcgaaggcgtatccc
gcttccgacgatgctctgtcgcggctgttgagtctggcgctctccaaccgctgtgcggag
atgagtgtctcgatgtcgctcgtcgggaatgcggcggatgtggagaacctggtccactgg
cacatccatcaccggcagtcggccaagcatctgccgaagctgcttcagggttggcgtggc
gaagtgtgcgggacgctgctttcggacgtgctggatgggaagctgacgttgcgggtggcc
gatccgcgttcggatgcgccgctgcggttcgagccgtacaagccaagttga
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