Planctomyces sp. SH-PL14: VT03_18495
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Entry
VT03_18495 CDS
T04354
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pls
Planctomyces sp. SH-PL14
Pathway
pls03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pls00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VT03_18495 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pls03400
]
VT03_18495 (mfd)
Enzymes [BR:
pls01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VT03_18495 (mfd)
DNA repair and recombination proteins [BR:
pls03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
VT03_18495 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_22
UB2H
Motif
Other DBs
NCBI-ProteinID:
AMV19893
UniProt:
A0A142WYK0
LinkDB
All DBs
Position
complement(4781878..4785183)
Genome browser
AA seq
1101 aa
AA seq
DB search
MNDRGGGQTIRALPDLIARIRHFDEFRHVLGALQHGESGTIDGAWGSSSALTSATLASEV
PGTLVVVLPRLSEVDDFAADLAPYLPEPPRVFPAWETLPKERSVSDQVFGARLRVLQELE
SPTPPKVVVTCFPALMQPVPSRESRQAGTRTLQVGKDLEVDEFLLWLVQQGFERVPSIEA
PGEFAVHGGIIDIFPPDATDPLRVELFGDEIDSIRRFDVETQRKVEDLKQVALTAIGPKS
EETKGEPASTKKAPKAQDPAPVPSAYFFDSLPKGSWLVLSELQDLVDEGKHYLERLENPQ
GLFSVQATLARTTERPTVTVSALAGDSAETTCHLKVESIERFTGPRAEVLNELATIVGRD
ETVLIACHNQGERDRLGELLKESVPELAPRVTLCLGTVTRGFRLVRDRILVLSDNELFNR
VEVRRTTRTRKRAEGRAIDSFLDLKVGDLIVHLAHGIGRFRGMELLEKEGAKEEHLSLEF
RDGVMIYVPVSLIHLVQKYVGASKGSPPLSKIGGTAWAGNKSRVAQAVQDMASDMLKLQA
QRAHKPGYACPPDSHLQQEFDAAFPYVPTDDQVRAIDDSKIDLMRDRPMDRLICGDVGFG
KTEVAMRAVFKMVDAGKQVAVLVPTTVLAEQHYRSFSDRMAEFPVRVDVLSRFRSTKETK
ELLLKMEEGQVDVVIGTHRMVQKDVKFKDLGLLVIDEEQRFGVDAKEMLKRVRLSVDVLT
LSATPIPRTLHMSLLGIRDISNLTTPPQDRMAIETRIVRWDADLIKQAIVREMNRGGQVF
FVHNKVWDIKFVAERLQAIVPDARIAIVHGQMNENELERNMLDFVRHRADILLATTIIES
GVDIPNANTMFIDQAENYGLADLHQLRGRVGRYKHRAYCYLLLDENKSLTSIAARRLKAI
EEFSELGAGFKISMRDLEIRGAGNILGTEQSGHISTVGYELYCQLLENAVRSLKGMPARE
HPHVDVELAVTAFLPNSYVPAGRPKIDLYRKISAVATLEELGELANEMRDRFGPIPAEAQ
QLLLVRELQLHAWRWSIRRIYTEEGRFAVFEYKDDKTIKQLQKKLGSDLRIVDARKAYLL
LPKRDLGAHDIVDHLKSLLPG
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgaacgatcgcggcgggggacagacgatccgggctctcccggatctgatcgcacgcatc
cgtcacttcgacgaattccgccacgtgctcggggccctccagcacggcgagagcgggacc
atcgacggcgcgtggggctcatcgtccgcgctgacctcggccactctcgcctccgaagtc
cccggcacactcgtcgtcgtcctgccacgactcagcgaagtcgacgacttcgcagccgac
ctcgccccctacctcccggagcccccccgcgtcttccccgcctgggaaacgctccccaaa
gaacgctcggtctccgaccaggtcttcggcgcccggctccgcgtcctgcaggaactcgag
tcccccacgccgcccaaggttgtggtcacctgcttcccggccctgatgcagccggttccg
tcccgtgagtcacggcaggcgggcactcgaacgctccaggtcggcaaggatctggaggtg
gatgagttcctcctctggctcgtccagcagggattcgagcgggtcccgtcgattgaagct
cccggcgaattcgcggtccacggcggaatcatcgacatcttcccgcccgacgcgaccgat
ccgctgcgggtcgaactcttcggcgacgagatcgactcgatccgccgcttcgacgtcgag
acccagcgcaaggtcgaggacttgaagcaggtcgccctgacggcgatcgggccaaagtcg
gaggagaccaagggcgaaccggcctcgacaaagaaagcccccaaggcccaggacccggcc
cctgttccgtcggcctacttcttcgattccctcccgaagggaagctggctcgtcctttcg
gaactgcaggacctcgtcgacgagggaaaacactacctggagcggctggagaacccgcag
gggctgttctccgtccaggcgacgctggcccggacgaccgaacggccgaccgtgaccgtt
tcggccctcgccggggacagcgccgagacgacctgccacctcaaggtggagtcgatcgag
cggtttaccggaccgcgggccgaggtcctcaacgagctggcgacgatcgtcggtcgggac
gagacggtcctcatcgcctgtcacaaccagggggaacgggaccgcctgggggaactgctc
aaggagtcagtcccggagctggccccccgcgtgacgctttgcctggggaccgtgacccgc
gggttccggctcgtccgcgaccggattctcgttctcagcgacaacgagctgttcaaccgc
gtcgaggtccgccgcacgacccggacccgcaaacgggccgaagggcgggcgatcgacagc
ttcctcgacctcaaggtcggggacctgatcgtccacctcgcccacgggatcgggcggttc
cggggaatggaactgcttgagaaggaaggagccaaggaggagcacctgtcgctggagttc
cgcgacggggtcatgatctatgtcccggtctcgctgatccacctcgtccagaagtacgtc
ggggcctcgaagggctcgccgccgctctcgaaaatcggcgggacggcgtgggcggggaac
aagagccgcgtcgcgcaggccgtgcaggacatggcctcggacatgctcaagctccaggcc
cagcgggcccacaagcccggctacgcctgtcccccggacagccatctccagcaggagttt
gacgcggcatttccttatgtcccgaccgacgaccaggtccgggcgatcgacgacagcaag
atcgacctgatgcgggaccggccgatggaccggctcatctgcggagacgtcggattcggc
aagaccgaggtcgccatgcgggcggtcttcaagatggtcgacgccgggaaacaggtggcg
gtcctcgtccccacgacggtcctggcggagcagcactaccgctcgttctccgaccggatg
gcggagttcccggttcgggtcgacgtcctctcccggttccgatccaccaaggagaccaag
gagctgctcctcaagatggaggaggggcaggtcgacgtcgtgatcgggacccaccggatg
gtgcagaaggacgtcaaattcaaggacctggggctgctcgtcatcgacgaagagcagcgg
ttcggtgtcgacgccaaggagatgctgaagcgagtccggctctcggtcgacgtcctgaca
ctctccgcaacgcccattccccggacgctccacatgtcgctcctgggaatccgcgacatc
tcgaacctgacgacgccgccgcaggaccggatggcgatcgagacccggatcgtgcggtgg
gatgcggatctcatcaagcaggcgatcgtccgcgagatgaaccgcggcggacaggtgttc
tttgtccacaacaaggtgtgggatatcaagttcgtcgccgagcggctgcaggcgatcgtc
ccggatgcccggattgcgatcgtccacggccagatgaacgaaaacgagcttgagcggaac
atgctcgacttcgtccgccaccgggccgacatccttctggcgacgacgatcatcgagagc
ggggtcgacatccccaacgcgaacacgatgttcatcgaccaggcggagaactacggcctg
gccgacctgcaccagctccgcggccgcgtcggccgctacaagcaccgggcctactgctac
ctgctgctcgacgagaacaagtcgctcaccagcatcgccgcccggcggctgaaggcgatc
gaggaattcagcgagctgggggcggggttcaagatctcgatgcgggatttggagatccgc
ggcgcggggaacatcctcgggaccgagcagagcggccacatctcgaccgtcgggtacgag
ctctactgccagctcctcgaaaacgccgtccggtcgctcaaagggatgccggcgcgggag
catccccacgtcgacgtggaactcgcggtcaccgcattcctccccaactcctacgtcccc
gccggacgcccgaagatcgacctgtatcggaagatttccgccgttgcgacactggaggaa
ctgggcgaactggcgaacgagatgcgggaccgcttcgggccgatccccgccgaggcgcag
caacttctgctggtccgcgagctccagctccatgcctggcgatggagcatccgccggatc
tataccgaggaagggcggttcgccgtcttcgagtacaaagacgacaaaacgatcaaacag
ctacagaaaaagctcggctccgacctccggatcgtggacgcccggaaggcgtacctgctg
ctgccgaagcgggatctgggggcgcacgacatcgtcgaccacctgaaatccctgttgccg
ggctga
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