Planctomyces sp. SH-PL14: VT03_20620
Help
Entry
VT03_20620 CDS
T04354
Symbol
rtcB_1
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pls
Planctomyces sp. SH-PL14
Brite
KEGG Orthology (KO) [BR:
pls00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pls03016
]
VT03_20620 (rtcB_1)
Enzymes [BR:
pls01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
VT03_20620 (rtcB_1)
Transfer RNA biogenesis [BR:
pls03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
VT03_20620 (rtcB_1)
Prokaryotic type
tRNA splicing ligases
VT03_20620 (rtcB_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AMV20314
LinkDB
All DBs
Position
5344390..5345877
Genome browser
AA seq
495 aa
AA seq
DB search
MLPETIVPTGDATALLPTGTKVPPITVIGTEAIRGTFDEKCLQQAINSRLAPGVTDLVLN
PDAHCGYGAPVGCVLVSPSHVYPGPVGVDIKCSMSLLQLDLPADQIIDRPTRRAIINAIC
ERTPTGAGRGQRHAKKSRFVDETLGRQAVIEGASESVCTQLGIPPEWATRCEDSFHVGHD
GTADALGQRLQGHLDGGFFRNFADKINQLGSYGGGNHFGECEVVQIADNDRARTAAEVFG
LRDGKVAFLSHCGSRGIGHNLASGQFKSLQAKFENWSIPLPGEDRELVYAPLGTPEADAY
LDDMALGANFATINHLLINALVLEAFQEVIPGVTGELVYFISHNIARQEIVGNRLSWVHR
KGSTRAFPGGHPALKGTLYESTGHPILLPGNPQAGSCVMVADDGAALSCYSVNHGAGRVL
GRKRAIRELDQRSIDQSFDEQDILTNCRTYPKDEAPAAYKDFNEVLRSVNQAGLATEVAR
LKARFVIKDGDQADD
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctgaaaccattgtccccacgggggacgcaacagctctccttcccacggggacg
aaagttccgcccatcacggtcatcggcaccgaggcgatccgcgggacctttgacgaaaaa
tgcctccagcaggcgatcaactcccggcttgctccgggggtcacggatctggtcctcaat
cccgatgcccactgcggctacggggcgccggtcgggtgcgtgctggtctcgccttcgcac
gtctatccggggccggtcggtgtcgacatcaagtgctcgatgagcctcctgcagctcgac
ctgccggccgatcagatcatcgaccggccgacccggcgggcgatcatcaacgccatctgc
gagcgaacgccgaccggcgccggacgcggacagcggcacgccaagaagtcccgcttcgtc
gatgaaacgctcggccgccaggcggtgatcgaaggagcctcggagtcggtctgcacccag
ctcgggattccgcccgagtgggcgacccgctgcgaggactcgttccacgtcggacatgac
ggcacggcggacgcgctcggccagcgactccagggacatctcgacggcgggttcttccgg
aacttcgccgacaagatcaaccagctcggctcgtacggcggcggcaaccacttcggcgag
tgcgaagtggtccagatcgccgacaacgaccgggcgcggacggcggccgaggtcttcggc
ctgcgggacgggaaggtcgcgttcctgtcgcactgcggttcgcgggggatcggacataac
cttgccagcgggcagttcaagtcgctccaggccaagttcgagaactggagcatcccgctt
cccggcgaggaccgggagctcgtctacgccccgctcggcacccccgaggcggacgcgtac
ctggacgacatggccctcggggcgaacttcgccacgatcaatcacctcctgatcaacgcc
ctcgtgctcgaggcgtttcaggaagtgatccccggcgtgacgggggagctggtgtacttc
atcagccacaacatcgcccggcaggagatcgtcgggaaccggctgtcgtgggtgcaccgg
aagggctcgacgcgggccttcccgggcggccatccggcgctgaaggggacgctctacgag
tcgaccgggcatccgatcctgctgcccgggaacccgcaggcgggatcgtgtgtcatggtg
gcggacgacggggcggcgctgagctgctacagcgtgaaccacggagccggacgggtcctg
gggcgcaagcgggcgatccgcgaactggaccagcgaagcatcgaccagtcgttcgacgag
caggacatcctgacgaactgccggacctatccaaaggatgaggccccggcggcttacaag
gatttcaacgaggtcctgcggtcggtgaaccaggcgggcctcgcgaccgaagtcgcgcgg
ctcaaggcccggttcgtcatcaaggatggcgaccaggcggacgactga
DBGET
integrated database retrieval system
