Planctomyces sp. SH-PL14: VT03_22115
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Entry
VT03_22115 CDS
T04354
Symbol
ykoV_2
Name
(GenBank) putative DNA repair protein YkoV
KO
K10979
DNA end-binding protein Ku
Organism
pls
Planctomyces sp. SH-PL14
Pathway
pls03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pls00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
VT03_22115 (ykoV_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pls03400
]
VT03_22115 (ykoV_2)
DNA repair and recombination proteins [BR:
pls03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
VT03_22115 (ykoV_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
Motif
Other DBs
NCBI-ProteinID:
AMV20611
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All DBs
Position
5701844..5702719
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AA seq
291 aa
AA seq
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MALHAAWKGHLRISLVSLPVQAFTTSAGSKSDDISFNQLHETCHSRIRYKKVCPIHGEVP
SSEIVSGYEFQKGQYVVLDRDELDAVRIQGDKAIDVATFVPLTSIDPALYAGQAYYLVPD
GKMAQKTYGLIRQGLADEGVSAIGEVVISRKQKLVSIRAAEDFLVMDCLYYEGELRDREE
IPTPSASGGKTTAAELKLLKSLVEGMSQESFDPSAFREDYNERVREVIEAKIEGKEVTAV
RESKEPDVINLMDAIKKSLKMTTPAPRAAGRKSRTTKGNGRSTKRPARKSG
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atggccctgcacgctgcctggaaagggcatcttcgcatcagtctcgtctcgctccccgtc
caggcgttcaccacgtccgcgggctccaagtcggacgacatctcgttcaaccagctccac
gaaacctgccacagccgcatccgctacaagaaggtctgcccgatccacggtgaggtcccg
agcagcgagatcgtctccggctacgagttccagaaggggcagtacgtcgtgctggatcgc
gacgagctcgatgccgtccgcatccagggggacaaggcgatcgacgtcgccacgttcgtc
cctctgacgtcgatcgatccggcgctctacgcggggcaggcgtactacctggttccggat
ggcaagatggctcagaagacgtatggcctgatccgtcaggggctggcggacgaaggggtt
tcggccatcggggaggtggtgatctcccggaagcagaagctggtttcgatccgggcggcc
gaggactttctggtgatggattgcttgtactacgagggggagttgcgggatcgggaggag
attccgacgccgagtgcgagtggcgggaagacgacggcggcggagttgaagctgctgaag
tcgctggtggaggggatgagccaggagtcgtttgatccgtcggcgttccgggaggattac
aatgagcgggtgcgggaggtgattgaggcgaagattgaggggaaggaggtgacggcggtt
cgggagtcgaaggagccggatgtcatcaacctgatggatgcgatcaagaagagtttgaag
atgacgacgccggcgccgcgagcggcggggcggaagtcgcggacgacgaaggggaatggt
cgttcgacgaagcgtcccgcgcgaaagtccggatag
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