Planctomyces sp. SH-PL14: VT03_25740
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Entry
VT03_25740 CDS
T04354
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pls
Planctomyces sp. SH-PL14
Pathway
pls03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pls00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VT03_25740 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pls03019
]
VT03_25740 (pnp)
03016 Transfer RNA biogenesis [BR:
pls03016
]
VT03_25740 (pnp)
Enzymes [BR:
pls01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
VT03_25740 (pnp)
Messenger RNA biogenesis [BR:
pls03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
VT03_25740 (pnp)
Transfer RNA biogenesis [BR:
pls03016
]
Prokaryotic type
tRNA degradation factors
VT03_25740 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
KH_1
PNPase
KH_KhpA-B
KH-I_KHDC4-BBP
KH_PNO1_2nd
KH_2
S1_RRP5
PucR-like_N
SPATA25
Motif
Other DBs
NCBI-ProteinID:
AMV21330
LinkDB
All DBs
Position
6626664..6628844
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AA seq
726 aa
AA seq
DB search
MRGRLPDPLGAGQVQRVVVVADRKEKPVKVSVSKEVAGRTVTITTGEIAKQADGAVQVQF
GETLVFTAAQSGPSRPGTDFFPLTVEYRERLAAAGKFPGGFLKREGRPTQKEILTSRLTD
RPIRPLFPEGYRDEVQIIASVLAFDGENDPDVWSITAASSALMVAPLPFQGPIAGARVGL
IDGQFIAFPTKEQIEKSDLDLVVAGSTESILMIEGFGNKIPEEQMADALMFGHKVIKELC
QLQKDLVAKIDKKPVEFKKPADNPFAGVVKTEAYEQIKAARQNPKKSERSAATAKVKEAL
VEKYFPNKTTALEDGRTVDQLKAAFSDLDHHVCRELTLSGNRLDGRPLNQLRNVNCDVSV
IPRVHGSSLFTRGETQSLCTIVLGTVRDQQRNDSLYGEQSKGFMLEYNFPSYSVGECRPI
RGPGRREIGHGALAERSLAWVLPKADAFPYTVKVISDITESNGSSSMASVCSGTLAMMDA
GIPLQQPVAGISIGLVKEGSKYVLLTDIIGDEDHFGDMDFKIAGTPHGITGIQLDLKIDG
INEEIIRATLAQAREARRELLKIMLTTIRRPRTELSASAPRVLSTKIDPEKIGLLIGPGG
KTIRAMQEETQTTIDVVDDGTVTIAGANKQACDAAMARLEALTEEIKVGRVYMGTVSSIK
DFGAFIEIAPGKDGLCHISELAEGYVKSVHDVVKVGDKLEVKVIAVDEQNRVKLSHKALL
ADRKED
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgggcgtcttccagacccgctgggggcagggcaggttcagagagtcgttgtcgtt
gctgatagaaaagagaaacccgtgaaggtatccgtatcgaaggaagtcgctggccggaca
gtcaccatcaccaccggtgagatcgccaagcaggccgatggggccgtgcaggttcagttt
ggagaaaccctcgtcttcaccgccgcccagagcggcccgtcccgtcccgggaccgatttc
ttccccctgaccgtcgaataccgcgagcggctggctgccgccggtaagttccccggcgga
tttctgaagcgggaaggccgtccgacgcagaaggaaattctgacgtcccgcctgaccgac
cgcccgatccgcccgctcttcccggaaggctaccgggacgaagtccagatcatcgccagc
gtcctcgcctttgatggcgagaacgatccggacgtctggtcgatcaccgcggccagcagc
gccctgatggtcgcgccgctcccgttccagggaccgatcgccggtgcccgcgtcggcctg
atcgacggccagttcatcgcgttcccgacgaaggagcagatcgaaaagagcgacctcgac
ctcgtggtcgcgggaagcacggaatcgatcctcatgatcgaaggcttcgggaacaagatt
cccgaagagcagatggccgacgctctgatgttcggccacaaggtcatcaaggaactctgc
cagctccaaaaggatctcgtcgccaagattgacaagaagccggtcgagttcaagaagccc
gccgacaacccgttcgccggcgtcgtgaagaccgaagcgtacgagcagatcaaggcggcc
cgccagaacccgaagaagtccgagcgctccgccgcgaccgccaaggtcaaggaagccctc
gtcgagaagtacttcccgaacaagacgaccgccctggaagacggccggaccgtcgaccag
ctgaaggccgccttctcggacctcgatcaccacgtctgccgcgagctgaccctcagcggc
aaccgtctcgacggccgcccgctgaaccagctccgcaacgtcaactgcgacgtctcggtc
atcccccgcgtccacggctcgtccctcttcacccgcggtgaaacgcagtcgctctgcacg
atcgtcctcggcaccgtccgcgaccagcagcggaacgactcgctgtacggcgagcagtcc
aagggcttcatgctcgagtacaacttcccgtcgtactcggtcggcgaatgccgcccgatc
cgcggaccgggacgccgggaaatcggccacggtgccctcgccgagcggtcgctcgcctgg
gtcctgccgaaggcggacgcgttcccctacacggtcaaggtcatttcggacatcaccgag
tcgaacggctcgagctcgatggccagcgtgtgcagcgggaccctggccatgatggacgcg
gggatcccgctccagcagccggtggccgggatctcgatcggcctcgtcaaagaaggaagc
aagtacgtcctcctgaccgacatcatcggggacgaagaccacttcggcgatatggacttc
aagatcgccgggacgccgcacggcatcaccgggattcagctcgacctgaagatcgacggg
atcaacgaagagatcatccgggcgaccctggctcaggcccgcgaagcccgccgcgagctc
ctcaagatcatgctgaccacgatccgccgtccgcggaccgaactctcggccagtgcgccg
cgggtcctcagcacgaagatcgatccggagaagatcggcctcctcatcggcccggggggc
aagacgatccgcgccatgcaggaagagacccagacgacgatcgacgtcgtcgacgacggg
acggtcacgatcgccggtgccaacaagcaggcgtgcgacgccgccatggcccgcctcgag
gccctgaccgaagagatcaaggtcggccgcgtctacatggggaccgtcagctcgatcaag
gacttcggagccttcatcgagatcgctccgggcaaggacggcctgtgccacatcagcgag
ctggccgaaggctacgtcaagtcggtccacgacgtggtcaaggtcggcgacaagctggag
gtcaaggtgatcgccgtcgacgagcagaaccgcgtcaagctctcgcacaaggcgctcctg
gccgaccgcaaggaagactga
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