Planctomyces sp. SH-PL14: VT03_29035
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Entry
VT03_29035 CDS
T04354
Symbol
sigA_3
Name
(GenBank) RNA polymerase sigma factor SigA
KO
K03086
RNA polymerase primary sigma factor
Organism
pls
Planctomyces sp. SH-PL14
Pathway
pls02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pls00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
VT03_29035 (sigA_3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pls03021
]
VT03_29035 (sigA_3)
Transcription machinery [BR:
pls03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
VT03_29035 (sigA_3)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
HTH_17
HTH_23
Mor
HTH_29
MerR
MerR_1
HTH_Tnp_ISL3
AbiEi_4
HTH_58
KORA
RRXRR
Motif
Other DBs
NCBI-ProteinID:
AMV21983
LinkDB
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Position
complement(7438095..7439759)
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AA seq
554 aa
AA seq
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MSQYKNPAIRQLTDQQVRYAPIDVRVEQMDRAEQFLTEIDPSQSYRYQDVCERVTSFRPA
AYPQLEIEGGDLAHDLQLFVEDLSTSANLAVETMPEPVLTVEDVSKKYNVSTKTVDRWRK
RGLVSRRFRFGNRTRVGFLTSSLTRFVNEHHDEIDRGSRFTQLSETEREDIILHARKLAR
SGTCLTEISKRLSKSFERSPETIRYTLKQYDADHPENAVFPDASEPLGADRKKEIYQRYK
RGTAIDVLAGEYCRSKSSIQRIVSEVRAELIFEQPIDFMDSPEFHVPAAEVVILGAPPVV
DKKGPKVKAPPGLPPYLASLYTVPLLTREEEGYYFRKMNFLKFQAHELREQIDRSRPRAS
ELDRLESLVEQAGEVKNFLIRSNLRLVVSIAKRHMTPTTSFFEMVSDGNMSLIRAIEKFD
YTKGNKFSTYATWAIMKNYARSIPAHYTQMDRFRTGNEEVFEFSREKRGSQFLDEQVNQG
QHKILMGILDQLDERERAIIVNRYGLDVGSDPLTLEEVGNRFGVTKERIRQIETRALQKM
RKILADEPVDIPGV
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagtacaaaaatcccgccatccggcagctgactgaccagcaggtccgatacgct
ccgattgatgtgcgggtcgagcaaatggatcgtgccgagcagttcctgacggagatcgat
ccttctcaatcctatcgctaccaggatgtctgtgaacgggtgacttcgttccgccccgcg
gcttatccccagctggagatcgaagggggagacctcgcgcacgacctgcagctcttcgtc
gaagacctttcgacgagcgccaacctggccgtcgaaacgatgccggagccggtcctgacc
gtcgaggacgtcagtaagaagtacaacgtctcgaccaagaccgtcgaccgctggcggaag
cgcggtctcgtgagccgtcggtttcggttcggcaaccggacccgtgtcggcttcctgacc
tcatcgctgacgcggttcgtcaacgagcaccacgacgagatcgatcggggatcgcggttc
acgcagctcagcgagacggagcgggaggacatcatcctccacgcccgcaagctggctcgt
tccgggacctgcctgaccgagatcagcaagcggctttcgaagtcgttcgagcggtcgccg
gagacgatccggtacacgctcaagcagtacgacgcggatcatcctgagaacgcggtgttt
ccggacgcctccgagcctttgggcgcggatcggaagaaggagatctaccagcggtacaag
cggggtacggcgatcgacgttctggcgggggaatactgccggagcaagtcgtcgatccag
cggatcgtgtcggaagttcgtgccgagctgattttcgaacagccgatcgacttcatggac
agccccgagttccacgttcccgccgcggaagtggtgatcctgggtgctcctccggtggtc
gacaagaagggtccgaaggtcaaggctcctccggggctgcctccctacctggcgagcctg
tacaccgttccgcttctcacccgggaagaggaggggtactacttccggaagatgaacttc
ctgaagttccaggcgcacgagctgcgtgagcagatcgaccggagccgcccgcgggcttcg
gagctggaccggctggagtcgctcgtcgagcaggccggcgaggtgaagaacttcctcatc
cgcagcaacctgcggctggtggtgtcgatcgccaagcgtcatatgacgccgacgacgagt
ttcttcgagatggtttcggacgggaacatgtccctgatccgggcgatcgagaagttcgac
tacaccaaggggaacaagttctccacgtacgccacctgggcgatcatgaagaactatgcc
cggtcgattccggcccattacacgcagatggaccggttccggacggggaatgaagaggtg
ttcgagttctcccgtgagaagcgggggagccagttcctggacgagcaggtcaatcagggt
cagcacaagattctgatggggattctggaccagcttgatgagcgggaacgggcgatcatt
gtgaatcggtacggcctggacgtcgggagcgatccgctgacgctggaggaagtcggaaat
cggtttggtgtgacgaaggagcggatccggcagatcgagacgcgtgcattgcagaagatg
cggaagattctggcggatgagccggtggatattcctggcgtgtag
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