Planctomyces sp. SH-PL14: VT03_30515
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Entry
VT03_30515 CDS
T04354
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pls
Planctomyces sp. SH-PL14
Pathway
pls03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pls00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VT03_30515 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pls03019
]
VT03_30515 (cshA)
03009 Ribosome biogenesis [BR:
pls03009
]
VT03_30515 (cshA)
Enzymes [BR:
pls01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VT03_30515 (cshA)
Messenger RNA biogenesis [BR:
pls03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VT03_30515 (cshA)
Ribosome biogenesis [BR:
pls03009
]
Prokaryotic type
rRNA helicases
VT03_30515 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AMV22277
UniProt:
A0A142X5H5
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All DBs
Position
7827881..7829125
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AA seq
414 aa
AA seq
DB search
MISKKDGAATSFADLGLGKLMMRAIDRVGYTAPTPIQRDFIPIAIQGVDCTGQARTGTGK
TAAFVIPILERIDHSLPEIQALVLSPTRELSEQVAAEARKLAGDHGCDPVLLVGGRPLGP
QIRQLQQRPTIVVGTPGRVIDLMQRGSLNLGTVKIVVLDEADRMLDIGFRPDIERILKRC
PSERQTLLLSATMPEAVERLAKRYMRDPQRVDLSQDGVGNQIEQFYCTVDKDKKFGLLVR
LLLAERPQQAIVFCRTKRGADDIYNRLRRKLPDIGAMHGDLQQSLRDKVMKRLRSGELRL
LIATDVVGRGIDVSGISHIINYDLPEDCDDYVHRVGRTGRLSSEYPGRAFSFVMQEEGEQ
LTRIEMRIDRLLDEMHFPGIDAYRSRPKRVHIAEDLETPVTPVLDTDAWDAIEL
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
ttgatttcgaagaaggatggagccgcgacatcgttcgccgacctgggtctcggcaaattg
atgatgcgggccatcgaccgcgtcggctatacggccccgacgcccattcagcgtgatttc
attcccatcgccattcagggcgtggattgcaccggccaggctcgcacgggcacggggaag
acggctgctttcgtcatcccgattctcgaacgcatcgaccactcgcttcccgaaatccag
gccctcgttctctcgccgacccgcgagctgagcgagcaggttgccgccgaggcccgcaag
cttgcgggagaccacggctgcgatccggtcctgctcgtcgggggccggcctctcggtccg
cagatccgccagctccagcagcggcccacgatcgtcgtggggacccccggtcgcgtcatc
gacctcatgcagcggggctcgctcaacctggggacggtcaagatcgtcgtcctcgacgaa
gcggaccggatgctcgacatcggcttccggccggacatcgagcggatcctgaaacgctgc
ccctccgaacgccagacgctgctcctctccgccacgatgcccgaggcggtcgagcggctg
gcgaagcggtacatgcgcgacccgcagcgggtcgacctgtcgcaggacggcgtcgggaac
cagatcgagcagttctactgcacggtcgacaaggacaagaagttcggcctcctcgtacgg
ctcctgcttgccgagcggccgcagcaggcgatcgtcttctgccgcacgaagcgcggcgcg
gacgacatctacaaccgcctccgtcgcaagctcccggatatcggggcgatgcacggcgac
ctgcagcagagcctgcgggacaaggtcatgaagcggctccgctccggcgagctgcggctc
ctgatcgccaccgacgtggtcggccgcggcatcgacgtgagcgggatttcgcacattatc
aattacgacctcccggaggattgtgacgattatgtgcatcgcgtcggccggaccgggcgt
ctctcctcggagtatccgggacgggcgttcagcttcgtgatgcaggaagaaggggagcag
ttgacccgcatcgagatgcggatcgaccgacttctcgacgaaatgcacttccccggaatc
gacgcctaccgctcccgtcccaagcgggtgcatatcgccgaggacctcgagactccggtg
acgccggttctcgatacggacgcctgggatgcgatcgagctgtaa
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