Pelodictyon luteolum: Plut_0521
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Entry
Plut_0521 CDS
T00291
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
plt
Pelodictyon luteolum
Pathway
plt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Plut_0521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plt03019
]
Plut_0521
03016 Transfer RNA biogenesis [BR:
plt03016
]
Plut_0521
Enzymes [BR:
plt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Plut_0521
Messenger RNA biogenesis [BR:
plt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Plut_0521
Transfer RNA biogenesis [BR:
plt03016
]
Prokaryotic type
tRNA degradation factors
Plut_0521
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
Rrp44_S1
RNase_II_C_S1
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
ABB23405
UniProt:
Q3B5H6
LinkDB
All DBs
Position
612645..614933
Genome browser
AA seq
762 aa
AA seq
DB search
MKPNDHILINEFLFMRGESSLGAEIVNFLSEHEGQRYRSVELAKAMGYGESRQLPGFWYV
LHKMQDEGTLDKDSNRCYGMPGPDASYEDHLQHQKPFPIPDKDQYKVDSTYTGFITTHPN
GYGFVKVEGFDDDVFIKADVMNSAIHGDEVELTVTKVPKTYSSRSTPHQRCEGMVTKIIQ
RKVSTIVGTLVRGNRRFTLKADERKILPEIIISIKNAAKAKDGQKVMVGELDFSKEGAIQ
GKVLEILGTAGDSAVEVSAIARSKGIDETFDKEIVKAASAMKMGVTDKDLQERLDVRDKV
LFTIDPVDAKDFDDALSVEPLENGLWKIGVHIADVSHYVTEDSPLDKEALKRATSVYLVD
RVIPMLPSRLSEDICSLNPGVDRMAFSVFFTMTEDGKVQKHEFHKTVIHSKRRFTYEDVQ
EILNNKKGDYLMELQLLEKISVLLREERFRHGGLDFETEEVRFKLGKKGEPLEVMKKERL
GSHRLIEEFMLLANRKVAEFLTKTFKEGKKVPQPVIYRVHDSPQQERVIILANFVKKIGY
DLKINKGKDGPIVSAKSLRELLQKVHGTNVEFLVNELVLRCMSKAVYTGENDGHYGLGFE
HYTHFTSPIRRYPDLIVHRLLFEYEAFRKKRRKMPEARIAELKQKIDTVCRISNEREKVA
VEAERESIKLKQVEYMQSHTGKVYPGVISGATEYGIYVRMVDFAIEGLVHMRNLTDDYYE
FDEKSYSLVGKRRKKRLQIGQKVMVKVHEVDMQRRTIDLTLG
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
gtgaagccaaacgaccatattctcatcaacgagtttcttttcatgcgcggcgagagttcg
cttggcgctgaaatagtcaactttctttcagagcacgaagggcagcgttaccgctcggtg
gagctggccaaggccatgggctacggcgagtcccgccagcttcccggattctggtacgtg
ctgcacaagatgcaggatgaggggacgctcgacaaggattccaaccgctgctacggcatg
ccgggccccgacgcttcctacgaagaccatctacagcaccagaaacccttcccaataccc
gacaaggaccagtacaaggtcgacagcacctatacgggtttcatcaccacccatcccaac
gggtatggattcgtgaaggtcgagggattcgatgacgatgtcttcatcaaggccgatgtc
atgaactccgcaatccacggtgacgaggtcgagcttacggtcaccaaggtccccaagaca
tacagttcccgttcgacgcctcatcagcgctgcgagggcatggtcacgaaaatcatccag
cgcaaggtctcgaccatcgtcggcacgcttgtgcgcggcaaccgccgcttcaccctgaag
gcggatgaacggaagatcctgcctgaaatcatcatttcgatcaaaaacgcagccaaggcc
aaggacggccagaaggtcatggtcggcgagctcgatttcagcaaggagggagcaatacag
ggcaaagtgctggagatcctcggtacagccggtgactccgcagttgaagtgagcgccatc
gcccggagcaagggcattgacgaaaccttcgacaaggagatcgtaaaggccgcctcagcg
atgaaaatgggcgtgacagacaaagacctgcaggaacgcctcgacgtccgcgacaaggtg
ctctttaccatcgatcccgtcgacgcaaaggacttcgacgacgccctttcggtcgaacct
ctcgaaaacgggctctggaagatcggtgtacacattgccgacgtatcgcactatgtgacc
gaggactctccgctcgataaagaagccctgaaacgcgccacttccgtctatctcgtcgac
cgcgtcattccgatgctgccttcccgtctttccgaagacatctgcagcctcaaccccggc
gtcgatcgcatggcattctccgttttcttcaccatgacggaggatggcaaggtccagaag
catgagttccacaagaccgtcattcacagcaagcggcgtttcacctacgaagacgtccag
gagattctcaacaacaagaagggtgactacctgatggagctgcagctgcttgagaagatc
agcgtgctgcttcgtgaagagcgtttccgccacggcggccttgatttcgaaaccgaagag
gtccgcttcaagcttggcaagaagggcgagccgctcgaagtcatgaaaaaggagcgcctc
ggcagccatcgcctgattgaagagttcatgctgctggccaaccgcaaggtggcagagttt
ctgaccaagaccttcaaggaaggcaagaaggtgcctcagccggtgatctaccgcgtgcac
gattcgccccagcaggagcgggtcatcattcttgccaatttcgtcaagaagatcggctac
gacctcaagatcaacaagggcaaggacggcccgatcgtctctgccaagtcgctgcgtgag
ctcctgcagaaggtccacggcaccaacgtcgagttcctcgtcaacgagctcgtccttcgc
tgcatgtcgaaagccgtctataccggggagaacgatggccactacggcctcggtttcgag
cactatacccacttcacttcgccgatcaggcgctatcccgacctcatcgtgcatcgactg
ctcttcgagtatgaggcgttccgtaaaaagcgccgcaagatgcccgaggcgcgcattgcc
gagctgaagcagaaaatcgatacggtatgccgcatctcaaacgagcgcgaaaaggttgcc
gtcgaggctgagcgggaatccatcaagctcaagcaggtcgagtacatgcagagccacacc
ggaaaggtctatcctggcgtcatttcaggagccaccgagtacggcatctatgtccgcatg
gtcgatttcgccatcgagggtctggtgcacatgcgcaacctcaccgacgactactacgag
tttgacgagaagtcatactcgctggttggcaagcgccgcaaaaagcgcctccagataggc
cagaaggtaatggtgaaggtgcacgaggtcgacatgcagcgccgcaccatcgacctgacg
ctcggctag
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