Pelodictyon luteolum: Plut_0630
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Entry
Plut_0630 CDS
T00291
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
plt
Pelodictyon luteolum
Pathway
plt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
plt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Plut_0630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plt03400
]
Plut_0630
Enzymes [BR:
plt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Plut_0630
DNA repair and recombination proteins [BR:
plt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Plut_0630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
Cas3-like_C_2
RecG_dom3_C
Glyco_tran_WecG
AAA_19
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ABB23513
UniProt:
Q3B568
LinkDB
All DBs
Position
complement(732901..736230)
Genome browser
AA seq
1109 aa
AA seq
DB search
MDENMVCTHHMKTITGQAPTSTLLVRKKTGFLTEAVRRSEPFIRLFDALKAPSGINEPVR
ISGMQGSLGPLLAAALHDVWEGPVLVIAGAQAFDVYDHDLPALTSGKKACSTADGLPAAI
RALRGSGRPIILASASDLQTSLCRPEEASGRILRIEKDREAGYETLKTFLENNRFVHREF
VEDEGEYSVRGSIVDIFPYGTGEPVRIEFFGDTVTSLRSFDINSQLSGRTLDAAELSADL
TGEGPEAAATMLDYLPPSTLVIIDSTPEIRAEEDDRELEAALGQFLQIEIGPARDGSIDF
QSVEQTRINANFRMLATMLSRRDEARRRTVFAASSEREVRELADFLTEEAAEAGEGVLEE
IAWVPVNLHSGFRFAGIDLFTEADIFGKLHSRRARRKRKIKGISLKDLQKLKVGDHVVHE
DYGVGIFRSLETITAGNSEQECVLVEYEGGDQLFVNVQNINLLSKYAASEGSRPVLSKLG
SPKWAARKEKVRSKIRDIAINLIKLYAQRKMQAGFAFGPDSIFMREFESSFIFEETPDQL
KAIEEVKKDMQATHPMDRLICGDAGFGKTEIAMRAAFKAVEAKKQVAILTPTTILAHQHL
ETFTRRFLNFPITIAILSRFVPRAEQQETIRRIKEGKVDIVIGTHRLVSKDVSFRDLGLL
VIDEEQHFGVEVKEKLREQFPGVDTLTMSATPIPRTLQFSMLGARDLSIVSTPPKNRQPV
ETVVTDFEGDLIRSAIEREIAREGQVFFLHNRVASLGEMQQLLHDLVPRARIVFAHGQMP
ARELEKIMMDVMQGEVDVLISTTIIGSGIDISNANTIIINRADMFGLSDLYQLRGRVGRS
DRKAHCYLITPPLNTLKREAIQRLAVIESFTELGSGFTIALRDLDIRGAGNLLGAEQSGY
IHDLGFDLYQKMLEQTVAELKSGDFSHLFTGEARPDLPEKPTDMSFFFDALIPEHYVTAT
HERFMFYEKISRAAAARDIDAVGAELRDRFGPLPEEVETLMLLAKLKITASPLGLEKIDL
QQKTTTLILPDAREDGPVQGREFLQHLFTAVQEPSLEPYAPAFSFEKKMKLVLHHPPGAD
TAPTDLLRRYTALIRELDTASREQNATEN
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaaatatggtttgtacgcatcatatgaaaacaattacgggccaagcccccaca
agcaccctcctggtcaggaaaaaaaccggattccttaccgaggccgtccgccgttccgag
ccattcatcaggctgttcgacgccctcaaggcaccctccggcatcaatgaaccggtccgc
atctccggcatgcagggctcgctcgggccgctgcttgccgcagcgctgcacgacgtatgg
gaaggtcctgttctcgtgattgcaggagcgcaggccttcgacgtctacgaccacgacctt
cctgccctcacctccggcaaaaaggcctgcagcactgcagacgggcttcctgcagccatc
agggcgctcaggggaagcggccggccgatcatcctcgcttcggccagcgatcttcagacg
tcgctctgccgccctgaggaagcctccggccggatactccgcatcgaaaaggaccgggag
gccggctatgagacactgaaaacgtttctggaaaacaaccgcttcgtgcaccgcgagttc
gtcgaggatgagggcgagtattccgtacgcggctccattgtcgacatattcccatacgga
acgggcgaaccggtccggattgaatttttcggtgacaccgtcacctcgctccgaagcttc
gacatcaacagccagctttccggcagaacgctcgatgcggccgaactctccgcagactta
acaggggaaggtccggaagcggcggcgacgatgctcgactacctcccaccctccacgctc
gtcataatcgacagcaccccggaaatccgggctgaggaggacgaccgggagctcgaggcg
gcactcgggcagttcctgcagatcgagatcgggcccgccagagatgggtccatcgacttc
cagtcagtcgaacagacaaggatcaacgccaacttccgcatgctggccaccatgctcagc
cgacgggacgaagccaggcgacggacagtgtttgccgcatccagcgagcgggaagttcgc
gagctcgccgacttcctcaccgaggaagctgccgaagccggtgagggcgtacttgaggaa
atcgcctgggtgccggtaaacctgcacagcgggttccgctttgcaggcatcgacctcttt
accgaagcagacatcttcggcaagctccactcgcgcagggcgcgcagaaaacgaaaaatc
aagggaatctccctcaaagacctccagaagctcaaggtcggagaccatgtcgtgcatgag
gactacggggtcggaatcttccgttccctggaaaccatcaccgcggggaattcggagcag
gagtgcgtgctggttgaatatgaagggggcgaccagctcttcgtcaatgtccagaacatc
aaccttctctccaaatacgccgcatccgaaggatccagaccggtcctctccaagctcggc
agcccgaaatgggcggccaggaaagagaaggtccgctcgaagatccgcgacatcgccatc
aacctcatcaagctctatgcccagaggaaaatgcaggccggattcgcattcggtcccgac
tccatcttcatgcgcgaattcgagtcttccttcatcttcgaggagacccccgaccagctg
aaggccatcgaagaggtgaaaaaggacatgcaggcgacgcaccccatggaccgcctcatc
tgcggcgacgccgggttcggcaagaccgagatcgccatgcgggcggcattcaaggccgtc
gaagccaaaaagcaggtggccatcctgacgccgacgaccattctcgcgcaccagcatctg
gaaacattcacccggcgttttctgaacttccccatcaccattgcaatcctgagccggttc
gtcccccgtgcggagcagcaggagaccatccgccgcatcaaggaaggcaaggtagacatc
gtcatcggtacccaccgcctcgtttcaaaagacgtcagtttccgggaccttggactgctc
gtcatcgacgaggagcagcatttcggcgtggaggtcaaggaaaagctgcgcgaacagttc
cccggcgtcgacaccctcaccatgtcggcaaccccgattcccagaacccttcagttctca
atgctcggagcccgcgacctctccatcgtctccaccccgccaaaaaaccggcagccggtg
gaaaccgtcgtcaccgacttcgagggcgatctcatccgatcggccatcgagcgggaaatc
gcacgagagggtcaggtatttttcctccataaccgggttgccagcctcggagagatgcag
cagctgctccacgatctggtgccccgcgcccggattgtcttcgcgcacgggcagatgccg
gcacgcgaactcgaaaagatcatgatggatgtgatgcagggcgaggtggacgtgctcatc
tcgaccaccatcatcggctcgggcatcgacatatcaaacgccaataccatcatcatcaac
cgggctgacatgttcggcctctcggacctctaccagctccggggacgggtaggccgcagc
gaccgcaaggcccactgctacctgatcaccccgccgctcaataccctcaagcgggaggcc
atacagcggcttgccgtcatcgaaagcttcaccgagctcggttcagggttcacgatagcg
ctgcgcgacctcgacatccgaggcgccggcaacctccttggtgccgaacagtccggctac
atccacgacctcggcttcgatctctaccagaaaatgctcgaacagaccgttgccgaactg
aaatcgggcgatttcagccacctcttcaccggtgaagcccggcctgacctgccggagaag
ccgaccgacatgtccttctttttcgacgcgctcattcccgaacactacgttacggcaacc
cacgagcggttcatgttctacgaaaaaatctcccgtgccgccgcagcccgggacatcgac
gctgtcggtgcggaactgcgggaccggttcggcccccttcccgaagaggtcgaaaccctc
atgctcctggcaaagctcaagatcacggcttcaccgctcggtctcgaaaaaatagatctg
cagcagaaaaccaccacgctcatcctccccgacgccagagaggacggtcccgttcaggga
agggagttcctgcagcatctcttcaccgccgtccaggagccgagcctcgaaccttacgcc
ccggccttcagtttcgagaagaaaatgaaactcgtcctgcaccacccgccgggagccgac
actgcgccgactgatctgttgaggcgatacaccgcgctaatcagggaactcgacaccgcc
tccagggaacagaacgcaacagagaactga
DBGET
integrated database retrieval system
