Pelodictyon luteolum: Plut_0987
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Entry
Plut_0987 CDS
T00291
Name
(GenBank) DEAD/DEAH box helicase-like protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
plt
Pelodictyon luteolum
Pathway
plt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Plut_0987
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plt03019
]
Plut_0987
Enzymes [BR:
plt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Plut_0987
Messenger RNA biogenesis [BR:
plt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Plut_0987
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
Cas3-like_C_2
SNF2-rel_dom
EB1
Shikimate_DH
P-loop_SecA
CMS1
Phage_integrase
Motif
Other DBs
NCBI-ProteinID:
ABB23849
UniProt:
Q3B482
LinkDB
All DBs
Position
complement(1115046..1116302)
Genome browser
AA seq
418 aa
AA seq
DB search
MKFSSLHIIEPILRALEEEGYTHPTPIQTEAIPLILKGSDLLGCAQTGTGKTAAFAIPIL
QLLRERKAIDGKRKIRSLIVTPTRELAIQIGESFSAYGRHTGLTNTVIFGGVGQNPQVNA
LRRGVDILVATPGRLLDLMNQGILHLHDIEILVLDEADRMLDMGFIHDIRKILAAVPKER
QSLFFSATMPPEIQRLSSTILRHPAKVSVTPVSSTVDIINQQIYFVDRGNKSGLLVHLLQ
NPDIRTVLVFTRTKHGADKVVRHLEKHNITAEAIHGNKAQNARQRALSNFKSQKTRVLVA
TDIAARGIDVDDLEWVINYEMSNIAETYVHRIGRTGRAGSAGTAISFCDAEEKEYLRDIE
KLIAKSIPVVDSHPFPLMDHNPVKIIKEQGRGRSGHPAPRPQGNARPKQRPANAGKRW
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcagctcgctccatatcatcgaacccatcctccgcgctctcgaagaggaagga
tacacacaccccactccgatacagacggaagccattccgctcatccttaaagggagtgat
cttctcggatgcgcccagaccgggaccggcaaaaccgccgcattcgccatcccgatcctc
cagctgctccgtgaacgcaaagcgattgacggcaaacgtaagatcagaagcctcatcgtc
acgccgacccgtgagcttgccatccagatcggagaaagcttttcagcatacggccgccat
acaggcctcaccaacacggtcatcttcggcggcgtaggccagaaccctcaggtcaatgcg
cttcgccgcggagtcgacatccttgtggcgacacccggacggctcctcgacctcatgaat
cagggcatcctgcacctgcacgacatcgaaatcctcgtgctcgacgaagcagaccgcatg
ctcgacatgggcttcatccatgacatccgcaaaatccttgccgccgtgccgaaggaacgc
cagtcgctcttcttctcggcaaccatgcccccggaaatccagaggctttcctcaaccatc
cttcgccatcccgcgaaggtgtcggtcacgccggtctcctctacggttgacatcatcaac
cagcagatctacttcgtggatcgaggcaacaagagcggacttctggtccatctcctgcag
aaccccgacatcaggactgttctggtgttcacacgcaccaagcatggcgccgacaaagtg
gtgcgccacctcgagaagcacaacatcacggccgaggccattcacggcaacaaggcccag
aatgcccgccagcgggccctgtcgaacttcaagtcgcagaaaacgagggtgcttgtcgca
acagacattgccgccaggggaatcgacgtcgacgatctcgaatgggtcatcaactatgaa
atgtcgaacatcgctgaaacctacgtgcaccgcatcggacgtaccggcagggccggctcg
gccggtacggcgatttcattctgcgatgccgaggagaaagaatacctgcgcgacattgaa
aagctcatcgccaaaagcattcccgtcgtcgacagccacccctttccactcatggaccac
aacccggtaaagatcatcaaggagcagggacgcggccgcagtggtcacccggcaccgagg
ccgcagggaaacgccaggccgaaacaacgccccgccaatgccggaaaaaggtggtaa
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