Photorhabdus laumondii subsp. laumondii TTO1: plu0882
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Entry
plu0882 CDS
T00149
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
plu
Photorhabdus laumondii subsp. laumondii TTO1
Brite
KEGG Orthology (KO) [BR:
plu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plu03019
]
plu0882 (hrpB)
Enzymes [BR:
plu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
plu0882 (hrpB)
Messenger RNA biogenesis [BR:
plu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
plu0882 (hrpB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
CON_HrpB
WHD_HA2
AAA_19
AAA_30
Cas3-like_C_2
HA2_C
ResIII
nSTAND_NTPase5
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CAE13177
Pasteur:
plu0882
UniProt:
Q7N863
LinkDB
All DBs
Position
1007345..1009834
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AA seq
829 aa
AA seq
DB search
MLQCRRLKVNFLWYGVFVSLLPVYEIVEPVLSALKNSQQVLLHAPAGAGKSTALPLEILK
KAAFSGRIIMLEPRRIAARSVANRLAAQLNENIGQTVGYRMRSETKVSVTTRLEVVTEGI
LTRMLQQDPMLTGVSLVILDEFHERSLQADLALALLLDVQAGLRDDLRILIMSATLDNQR
LCSLLPDAPVIISEGRSFPVTRHYCPLSAHQPFEQSIATVVLRLLQQEQGSVLLFLPGSG
EIQRVFGLLSGRVAEDTDLCPLYGALSLAEQQKAIEPSPSGRRKVVLATNIAETSLTIEG
IRLVIDSGLERTTRFEPKNGLTRLITQRISQASMTQRAGRAGRLEAGVCWHLFSQEQAER
AVEHSEPEILNADLSSLWLSLLQWGCHDISQLHWLDIPPAAALAVAKSLLLQLGAISNSG
QLTSRGSKMAESGSDPRLAAMLCAGLEQGADMLATAAMLTAILEEPPRDGQPDITYWVEQ
RQAHWLRRAKQLVRNMGDHFGEPVGGFAAMLLAQGFPDRIAKNRDKGGRFQLSNGLGTII
DDEETLSGESWLVAPSLLQNSRNPDARILLACPLDIERLIQQQPNLFSEQSVVEWDDNKG
TLQAWKRLQCGSLTVKAQRLAKPSDEQLQQALLNWLRSEGLHELNWSPAAVQLCIRIQCA
AKWLPEMLWPPVNNDALMASLDDWLMPFLTGVRDLKGLKQIDLLPALENLLDWQQQQCLD
NELPIYYTVPTGSRIAIRYFSDKPPVLSVRIQEMYGEWQSPSLAKGRVTLVLELLSPAQR
PLQITQDLAAFWQGSYREVQKEMKGRYPKHLWPDDPANTVPTRRTKKYS
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atgctacaatgcaggcggttgaaagttaactttctttggtatggagtatttgtgtcttta
ttgcctgtatatgagatcgtcgaacctgtcctgagtgcgttgaaaaattcacaacaggtc
ctgcttcatgctccggccggtgcagggaaatcgacggctttgccattggaaattttgaaa
aaagccgctttttccgggcgtatcataatgttagaaccacggcggattgccgctcgcagt
gttgctaatcgccttgccgctcaactgaatgaaaatatcggacagaccgtgggttaccgg
atgcgttcagaaacaaaagtgagtgtaactactcgccttgaagtggtaacagaaggcatt
ttaacccgaatgttacagcaggaccctatgctgacaggggtttctctggtgattctggat
gaattccatgagcgcagcttgcaggctgatttggcgttggcattgttgctggatgtacag
gcagggctgcgggatgatctgcgcattttgatcatgtcagcgacgctggataatcagcgg
ctctgttctttattacctgatgcaccagtgattatttcagaagggcgaagctttcctgtg
accagacattattgtcctttgtctgctcaccaaccttttgaacagagtatcgccaccgtt
gtattgcggttactccaacaggagcaaggttctgtgctgttgtttttgccgggtagcggg
gaaattcaacgggtgtttggactgcttagcgggagagtggctgaggataccgatttgtgc
ccgttatacggtgcgttgtcattggctgagcaacaaaaagcgatcgaaccttcaccatct
ggacgccgtaaagttgttttggcgactaatattgcagaaaccagtttaacgattgaaggt
attcggttggtgattgatagtggtcttgaacgcacgacgcgttttgaacccaaaaatggt
ctgactcgcctgatcactcaacgtatcagtcaagcttctatgacacaacgagctggtcgg
gcaggacggttagaagccggtgtgtgttggcatctattcagccaagaacaggcagaaaga
gcggtagagcatagtgagcccgaaattctgaatgctgatctcagtagcttatggctctcc
ttattgcagtgggggtgtcatgatatttctcaattgcactggctagatataccacctgcg
gcggctctggcggtggctaagtcgctgttattacagttaggtgcaatcagtaacagtggt
cagttaacgtccagaggcagtaaaatggcggaatccggtagtgatccgcgtctggcagcg
atgttatgtgcggggttggaacaaggggccgatatgctggcaaccgccgctatgctgacc
gcgattctggaggagccgccccgtgatggtcagccggacatcacttattgggttgagcag
cgacaagctcattggttacggcgggcaaagcagttagttagaaatatgggtgatcatttt
ggtgagccagtcggtggatttgctgcaatgctattagcccaaggtttccctgacagaata
gccaaaaatcgggataagggagggcgttttcaactgtcgaacggtctgggaacgataatc
gatgatgaagaaacgttatctggcgaatcgtggctggtggctccttcattattacaaaac
agtagaaatcctgacgcgcgtattttgctggcttgtcctctggatattgaacgactgata
cagcaacagccgaatttattcagtgaacagagtgtcgttgaatgggatgataacaaaggg
acgttgcaggcttggaagcggctgcaatgtggcagcctgacagtaaaagcccaacgattg
gcaaagccttccgatgagcaattacaacaggctctgctaaactggttacgcagtgaggga
ttacatgagctgaattggtcacctgcggcggttcagttgtgcatccgtatccaatgtgcg
gccaaatggttacctgaaatgctgtggccgccagtcaataatgatgcattaatggcttct
cttgatgattggttaatgccgttccttactggtgtgcgtgatttgaaagggctgaaacag
attgatttgttgccggcactggaaaatttgctggattggcagcaacaacagtgtctggat
aatgaactgcctatttattacactgtccctaccggcagtcggatagcaatccgttatttc
agtgataaaccaccggtattatcagttcggatacaggaaatgtatggtgagtggcaaagc
ccatctctggcaaaagggcgggtaacactggtgcttgaactactatcacccgcccaaagg
ccattgcagatcacacaggatttggctgctttttggcaaggatcctatcgtgaagtgcaa
aaagagatgaaagggcgttatccaaaacatttatggccggatgatccggcgaatacggta
ccgactcggcggacaaaaaaatattcgtaa
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integrated database retrieval system
