Photorhabdus laumondii subsp. laumondii TTO1: plu2135
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Entry
plu2135 CDS
T00149
Symbol
rnd
Name
(GenBank) Ribonuclease D (RNase D)
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
plu
Photorhabdus laumondii subsp. laumondii TTO1
Brite
KEGG Orthology (KO) [BR:
plu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
plu03016
]
plu2135 (rnd)
Enzymes [BR:
plu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
plu2135 (rnd)
Transfer RNA biogenesis [BR:
plu03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
plu2135 (rnd)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
CAE14428
Pasteur:
plu2135
UniProt:
Q7N525
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All DBs
Position
2519651..2520778
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AA seq
375 aa
AA seq
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MNYQLITTDAQLQQVCEGAKKYSKVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLNI
TNWQPFRELITHPQILKLLHAGSEDLEVFLNAFQCLPEPMIDTQVLAAFIGHPLSCGFAA
LVAEYIHVELDKSESRTDWLARPLSEKQCEYAAADVYYLLPLADILMTATAQAGYMEAAT
GECRLISRRRKEILEPESAYKQIGNICQLRPQQLACLKKLAAWRLSQARERDLAVNFVIR
EENLWQVARYMPTSLAELDALGLSGQEIRCHGRRLLAMVAESGNIPESECPPPMTNLIDQ
PGYRKAFKDIKALIHQVSEQHRFNSELLASRRQINQLLSVHWNLKQLNDKPELLSGWRGE
LLAEPVAEILANYPD
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
ttgaattatcagttgatcaccacagatgctcagttgcaacaagtttgcgaaggggcaaaa
aaatactcaaaagtagcattggatactgaatttgtacgcacacggacgtattacccgcaa
ttaggtttgatacaactgtatgatggcgaacaactttctctgattgatccacttaatatc
accaactggcaacctttccgtgagttaattactcatcctcaaatattgaagctgttacat
gctggcagtgaagatttggaagtttttctgaatgcttttcaatgcttgccagaaccgatg
attgatactcaggtcctggcggcttttattgggcacccgctttcatgtggctttgccgcg
ctggtggctgaatatattcatgtcgagctggataaaagcgaatctcgcactgattggctt
gctcgcccgttaagcgaaaaacagtgtgaatatgcagccgcagatgtttattatctgttg
cctttggcggatatcttgatgactgcaaccgcgcaggccggatatatggaggctgcgacg
ggtgagtgtcggcttatcagtcgacgccgtaaagagatattggaaccggaatctgcttat
aaacagataggcaatatttgtcaattacgtccccaacagcttgcgtgtttgaaaaaactg
gctgcatggcgtttgagtcaggccagagaacgcgatttagccgtaaacttcgtcattcgt
gaagaaaacttgtggcaggtagcgcgttatatgccaacttctctggcagagttggatgcg
ttagggttaagcgggcaggagattcgttgtcatggtcgccgtctattggcaatggttgct
gaaagtggaaatattccagaaagtgaatgcccgccgccaatgacgaacttgattgatcaa
ccgggttatcgcaaagcatttaaggatattaaggcgctgatccatcaagtcagtgaacag
catagatttaattctgaattattggcatctcgtcgtcagattaatcaattacttagtgtt
cactggaacttgaaacaattaaatgacaaacctgaactgcttagtggatggcggggagaa
ttgctggctgagccagttgcagagattctggcgaactatcctgattaa
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