Photorhabdus laumondii subsp. laumondii TTO1: plu4307
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Entry
plu4307 CDS
T00149
Symbol
rtcB
Name
(GenBank) Protein RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
plu
Photorhabdus laumondii subsp. laumondii TTO1
Brite
KEGG Orthology (KO) [BR:
plu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
plu03016
]
plu4307 (rtcB)
Enzymes [BR:
plu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
plu4307 (rtcB)
Transfer RNA biogenesis [BR:
plu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
plu4307 (rtcB)
Prokaryotic type
tRNA splicing ligases
plu4307 (rtcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
CAE16679
Pasteur:
plu4307
UniProt:
Q7MZI0
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All DBs
Position
5033110..5034336
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AA seq
408 aa
AA seq
DB search
MITNDYELMTAPNSVPVKMWTHGVPVEAEAREQLLNTAKMPFIFRHLAVMPDVHLGKGST
IGSVIPTRGAIIPAAVGVDIGCGMMAVRTSLNAKDLPDNLYAIRHAIEIAVPHGRTANRS
GQDKGAWQQPPETVDHHWSVLQTGFKQLTDKYPQLLKTNNHLHLGTLGTGNHFIELCLDE
SDRVWVMLHSGSRGVGNAIGNLFITLAQQDMKQHIAHLPDRNLAYFEEGSRHFADYMEAV
GWAQNFARHNREVMMQHTLAALATVITKPFTATMEAVNCHHNYVQQEQHFGQNVLVTRKG
AVAAHRGVMGIIPGSMGAKSFIVRGLGNKESFCSCSHGAGRVLSRTAAKKRFTIEDQKRA
TAHVECRKDSDVIDEIPMAYKDIEAVMAAQSSLVEIVHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
gtgataacaaacgattacgagttaatgactgcgccaaacagtgtaccagtgaaaatgtgg
actcatggcgtaccggtagaagcggaagctcgtgaacaactgttgaatacagcaaaaatg
ccttttatattcagacatttagccgttatgcctgatgtacatcttggtaaaggttcaacc
atcggcagtgtcatcccgactcgtggggcaattattccagccgcggtaggcgtagatatc
ggttgtggcatgatggcagtacgtacctcattgaatgccaaagatttaccggacaaccta
tatgcgatccgccatgctattgaaattgccgtaccacacggacgcacagcaaaccgtagc
ggtcaggataaaggcgcttggcagcaaccaccagaaaccgtcgatcaccattggagcgtg
ttgcaaaccgggtttaaacagctaaccgataaatatccacaattgctgaaaaccaataac
catctgcacttagggacactagggaccggtaatcacttcattgagctctgtctggatgaa
tccgaccgggtatgggtaatgctgcatagcggctcacgcggtgtaggaaatgccattggt
aatctatttatcacccttgcccaacaggacatgaaacaacatatcgctcacctgcctgat
cgtaatctggcctattttgaggaaggcagccgtcactttgctgattatatggaagcggtc
ggttgggcacaaaacttcgcccgccacaatcgcgaagtcatgatgcaacatacactggca
gcattggcgacggtaataacaaaaccattcactgccacaatggaagcggtaaattgtcac
cacaattatgtgcaacaggagcagcacttcggccaaaacgtgttagtcacacgcaaaggg
gcagtcgctgcacaccgaggcgtcatgggcatcattcccggctcaatgggtgcgaaaagc
tttatcgtacgaggtctgggaaacaaagagagtttctgctcatgcagtcacggtgcagga
cgagtattaagccgcacggcagcgaaaaaacgcttcacaatagaggatcaaaagcgtgcc
acggcacacgtggaatgccgcaaggacagcgacgttatcgatgaaattccgatggcctac
aaagacattgaggccgtaatggccgctcagtcttcactagtagaaatcgttcacaccctg
cgtcaagtggtttgcgtaaaaggataa
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