Photorhabdus laumondii subsp. laumondii TTO1: plu4523
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Entry
plu4523 CDS
T00149
Symbol
deaD
Name
(GenBank) inducible ATP-independent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
plu
Photorhabdus laumondii subsp. laumondii TTO1
Pathway
plu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
plu4523 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plu03019
]
plu4523 (deaD)
03009 Ribosome biogenesis [BR:
plu03009
]
plu4523 (deaD)
Enzymes [BR:
plu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
plu4523 (deaD)
Messenger RNA biogenesis [BR:
plu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
plu4523 (deaD)
Ribosome biogenesis [BR:
plu03009
]
Prokaryotic type
rRNA helicases
plu4523 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
DRTGG
UvrD-helicase
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CAE16895
Pasteur:
plu4523
UniProt:
Q7MYZ2
LinkDB
All DBs
Position
complement(5281393..5283327)
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AA seq
644 aa
AA seq
DB search
MRHHYMTTETEISFADLGLSAPILSALEDLGYEKPSPIQQQCIPHLLNGRDVLGMAQTGS
GKTAAFSLPLLHNINAELKAPQILVLAPTRELAVQVAEACADFSKHMRNVNVVALYGGQR
YDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIM
SQIPAEHQTALFSATMPEAIRRITRRFMNDPQEVRIQASVTTRPDISQSYWSVYGMRKNE
ALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDG
RLDILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRER
RLLRNVERTMKLTIPEVELPNAELLSQRRLERFAANVQQQLESSDLDQYRTLLSKLQPAE
DLDIETLAAALLKMAQGERPLILPPDPVRRPRREFNERDDRRRNGFDDRGERSDRPRRER
RDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFATHSTIELPKGMPGD
LLSHFTRTRILNKPMNMQLMGDAQPFERRERRGGGRNGNGNGNSSGSGPRRDRENFNGGG
RRFNGERRGGEGRGEGQSRSNFRGRGDDHGSSAPRRRYNNSNAQ
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgaggcaccattacatgaccactgagactgaaatctcttttgctgatctgggtttatca
gcacctatcctttctgcgctggaagatcttggctatgaaaagccatctccaattcagcaa
caatgtattccccatttattaaatggccgtgacgtactgggtatggcacagacggggagt
ggtaaaacagcggcattcagtctgcctttactacataatatcaatgctgagttgaaagct
ccgcagatccttgtgttggcaccgacccgtgaactggcggtacaggtagccgaagcgtgc
gcagatttttctaaacatatgcgtaacgtgaatgttgttgcactgtatggtgggcaacgt
tatgacgttcagttacgcgctttacgtcaagggccacaaattgttgtgggtacaccaggg
cgtcttctggaccatctgaagcgtggtacgttggatctgtctaacctgagcggtttagtt
ttggatgaagcagacgaaatgctgcgtatgggctttatcgaagatgttgaaaacatcatg
agccagattcctgctgaacatcagactgcactgttctctgcaactatgccagaagctatc
cgtcgcattactcgtcgttttatgaacgatccgcaagaagtgcgtatccaagcgagtgta
acgactcgtcctgacatcagccagagctactggtctgtttacggtatgcgtaaaaatgaa
gctttggtgcgtttccttgaagctgaggattttgatgctgcgattatttttgtgcgtacc
aaaaatgcaacgttggaagtagcagaagcactggagcgtaatggctacaacagtgcggcg
ctaaacggtgatatgaaccaggcactgcgtgagcagacattggaacgtctgaaagatggc
cgtttggatattttgattgcaactgatgttgcagcgcgtggcttggatgttgagcgcatc
agtctggttgttaactatgacattccaatggatgcggaatcttatgttcaccgtattggc
cgtactggccgtgcaggtcgtgcaggtcgtgcattgttgtttgtagaaaaccgtgaacgt
cgcttgttacgtaacgttgaacgtacaatgaagctgactatcccggaagttgaactgcca
aatgctgaattattgagtcagcgtcgtctggaaagatttgccgctaatgtacagcagcaa
ttggaaagtagcgatctagatcagtaccgtactctgttgtctaaactgcaacctgcggaa
gatctggatatagaaacgctggcggctgcattattgaaaatggcacagggtgagcgcccg
ttgattctgcctccggacccggttcgtcgtcctcgccgcgaattcaacgaacgtgatgat
cgtcgtcgtaatggttttgatgatcgtggcgaacgtagtgatcgtcctcgtcgtgaacgc
cgtgatgttggtgaaatggagttgtaccgtattgaagtgggccgcgatgatggtgttgaa
gttcgtcatatcgttggtgcgattgctaatgaaggtgatatcagcagccgttatattggc
aacatcaaattgtttgcaacgcattccacgattgaattgccaaaaggcatgccaggtgat
ttgttatcccactttacccgtacccgcattctgaataagccaatgaatatgcagttaatg
ggtgatgcacagccatttgagcgccgtgaacgtcgtggtggtgggcgtaacggcaatggt
aacggtaatagtagtggtagtggccctcgccgtgatcgtgagaatttcaatggtggtggc
cgtcgcttcaatggtgaacgccgcggtggagaaggtcgtggtgaaggtcagagccgtagc
aatttccgtggtcgtggtgatgatcatggttcatctgctccacgccgtcgttataacaat
agtaacgcacagtaa
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