Photorhabdus laumondii subsp. laumondii TTO1: plu4575
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Entry
plu4575 CDS
T00149
Symbol
rnr
Name
(GenBank) ribonuclease R (RNase R) (VacB protein)
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
plu
Photorhabdus laumondii subsp. laumondii TTO1
Pathway
plu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
plu4575 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plu03019
]
plu4575 (rnr)
03016 Transfer RNA biogenesis [BR:
plu03016
]
plu4575 (rnr)
Enzymes [BR:
plu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
plu4575 (rnr)
Messenger RNA biogenesis [BR:
plu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
plu4575 (rnr)
Transfer RNA biogenesis [BR:
plu03016
]
Prokaryotic type
tRNA degradation factors
plu4575 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
WHD_RNase_R
S1
Rho_RNA_bind
Hrs_helical
Motif
Other DBs
NCBI-ProteinID:
CAE16947
Pasteur:
plu4575
UniProt:
Q7MYU5
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All DBs
Position
complement(5338831..5341272)
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AA seq
813 aa
AA seq
DB search
MSQDPFLGREAEKYESPIPSREYILDIIAKHTVPVSRQELAQELNLINDEDIEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVEGHKDDFYLSAEQLKMAIH
GDVVLAQPLSLNRKGRNEARIVRVLVPKTSQIVGRYFLDSGMGFVVPDDSRLSFDILIPK
DESGGARMGNVVVVELITRPARRTKAIGKIVEVLGEKMGTNMAVEIALRTHEIPHSWPPQ
VENQVASLNEQVPESAKKDRVDLRTLPLVTIDGEDARDFDDAVYCERKRSGGWRLWVAIA
DVSYYVRPQTALDTEARNRSNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
AQGRLSSYKFYEAIMNSHARLTYTKVWRMLQGDEELREHYKPLVQHIEHLHELYQALENA
REQRGAISFESEEAKFIFNAERRIERIEPIVRNDAHKLIEECMILANIAAARFVEKNGEP
VLYRIHDRPREESIVNLRSVFGELGLTLPGGMQPTPKDYAQLMHQVAERPDHELLQTLLL
RSMKQAVYDPENRGHFGLSLNSYAHFTSPIRRYPDLVLHRAIKYLLAKQQGIVEQCGTPT
GGWHSDMEQMLQLGQHCSMTERRADEATRDVADWLKCDFMQDQVGNTFTGIITSVTGFGF
FVRLNELFIDGLVHVSTLSNDYYHFDNIGQRLVGEYSGKTFRLGDEVEIRVEAVHMDERN
IDFKLLSTARKARNVGKTVRDRERKVELGRESSKKKGRGYRKEAHFEPDGAVRKERSADK
PKGDKKKGKTLSTKTQKIVAKFKAKRAKKSADK
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatccttttttggggcgcgaagcagaaaaatacgaatcacctattccaagc
cgcgagtatatcttagacattattgctaaacatactgtaccggtaagtcgccaggaactg
gcacaagagctgaatctgattaacgatgaggatattgaagcgttacgtcgtcgtttacgg
gctatggaacgtgatggtcaattggttttcactcgtcgccaatgctatgccttgccggaa
agattggatttactgaaaggtactgttattgggcatagagatggttatggtttcctacga
gtagaaggtcacaaagacgatttttatctctctgccgagcagttaaaaatggctattcat
ggtgatgttgtgctggcacaaccattatccctgaatcgcaaagggcgtaatgaagcacgt
atcgttcgtgtattagtgcctaagaccagtcagattgttggccgctattttcttgattct
ggtatgggatttgttgtgccggatgatagccgtttaagctttgatatcttgatcccgaaa
gatgaaagcggtggtgctcgcatggggaatgtggtggtagtcgagttaattacacgcccg
gcgcgccgcacaaaggctatcggtaagattgttgaagtgttgggtgaaaaaatgggaacg
aacatggcagtggaaattgccctacgtactcatgaaattcctcacagttggccgccacag
gtggaaaaccaggttgcttccttgaatgagcaggtaccagaatcggcgaaaaaagaccgt
gttgatctgcgtactctgccgttggtgacaatcgatggtgaagatgcccgtgattttgat
gatgccgtttattgtgaaagaaagcgaagcggtggttggcgtttatgggttgccattgct
gatgtcagttactatgtgcgtccacaaacggcgttagataccgaagcacgtaaccggagt
aactcggtttacttcccatctcaggttgtccccatgttgccggaggtgctttctaatgga
ctctgttctctgaacccgcaggttgatcgcctttgtatggtgtgtgagatgacgatttca
gcgcaggggcgattatcatcctataaattttacgaagccatcatgaattctcacgcccgt
ctgacatataccaaagtatggcgtatgttgcagggtgatgaagagctgcgtgagcactac
aagccactggttcagcatattgagcatttacatgaattgtatcaggcactagaaaatgcc
cgtgagcaacgtggtgcaatctcgtttgagtcagaagaggcgaagtttatctttaatgct
gaacgtcgtatcgagcgaattgaaccgattgttcgcaatgatgctcataagttgattgaa
gagtgcatgattctggcgaatattgctgcggcgcgcttcgtggaaaaaaatggggagccg
gtgctttaccgtattcatgatcggccaagagaagaaagtattgttaacttgcgctcggtt
ttcggcgaattgggattgacgctgcccggtggcatgcaaccaacaccaaaggattatgcg
caactgatgcatcaagtggctgaacgcccggatcatgagctactgcaaaccctattactg
cgttcaatgaaacaggcagtttatgatccggaaaaccggggtcacttcggtctgtcatta
aattcttatgcgcattttacctcacctatccgccgttacccggatctggtgttgcatcgg
gcgattaaatatctgctagcgaaacagcaaggcattgttgagcaatgtggaacaccgacc
gggggatggcacagtgatatggaacagatgttgcaactgggccaacactgctccatgaca
gagcgccgcgcagatgaagcgacgagagacgttgctgattggcttaagtgtgattttatg
caggatcaagtgggcaatacttttactgggatcatcacgagtgtgacaggttttggtttc
tttgttcgcttgaatgagctgtttattgacggtctggtacatgtttccacgttgagtaat
gattattatcatttcgataatatcggtcagcgtttagtgggtgaatactcgggtaaaact
ttccggttaggggatgaagttgaaattcgtgtggaagcggttcatatggatgagcgtaat
attgactttaagctgctttctaccgcccgcaaagcccggaatgtaggtaaaacagtgcgc
gatagagagagaaaagtagaacttggccgcgaaagcagtaagaaaaaagggcgtggttat
cgcaaagaagctcattttgagcctgatggtgctgttcgtaaagagcgatctgcggataag
cctaaaggggataagaaaaagggtaagacgctttctaccaaaactcagaaaattgtcgct
aaattcaaagccaaacgggctaagaaaagcgcagataaataa
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