Pseudoduganella lutea: EWM63_10495
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Entry
EWM63_10495 CDS
T10124
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
plue Pseudoduganella lutea
Pathway
plue02020
Two-component system
plue02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
plue00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
EWM63_10495
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
EWM63_10495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plue03021
]
EWM63_10495
Transcription machinery [BR:
plue03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
EWM63_10495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
Xre-like-HTH
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
QBE63338
UniProt:
A0A4P6KYG0
LinkDB
All DBs
Position
complement(2481410..2482885)
Genome browser
AA seq
491 aa
AA seq
DB search
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELEQLLTDNPLLERLDDPLDRSVRL
LGDGAINTTQAPGEAPPEGGPPQDAPAAPEPEPYEGGEGEGLDPGAGDTDWSSAGSGKGP
DDDDGRPQLEASHRSLREHLMEQMRVTVLEPRDRALVELIIDALDDNGYLEESLEDIHAR
MPEELEIEFDELRTALKLLQSFDPAGIGARNASECLALQIRRMPGVPLVTRRMALCIVEK
HLQWFAQRDFNKLKKALDCDDEDLREAQAVIRQCNPHPGAAFAADVSDYVVPDVVVRKGR
NGWIVTLNNDVMPRLRVNALYASLLKQGKGETQMNAQLQEAKWLIKNMRQRFDTILRVAQ
AIVERQKNFFSHGAVAMRPLVLREIADTLGLHESTISRVTTQKYMLTPHGMFELKYFFGS
HVATEAGGEASSTAIRALIVQFTGAEDPKNPLSDSKIADMLGEQGMVIARRTVAKYREAL
KIPPVSLRKSL
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgaaacagtccttgcaactgcgcacttcccagcacctcgcgctgacgccgcaattgcag
cagtcgatccggctgctgcaattgtccacgctggagctgcaccaggaactcgaacagctg
ctgaccgataatccgctgctcgagcggctcgacgatccgctcgaccgttccgtgcgcctg
ctgggcgatggggcgatcaacaccacgcaggcgccgggcgaggcgccgcccgaaggcggc
ccgccgcaggatgcgccggccgccccggaaccggagccctacgagggcggcgaaggcgaa
ggcctcgaccccggtgccggcgataccgactggagcagtgcgggcagtggcaagggaccg
gacgacgacgatggccgcccccagctcgaggcaagccatcgcagcctgcgcgaacacctg
atggagcagatgcgcgtgacggtgctggagccgcgcgaccgcgccctggtggagctgatc
atcgatgcgctcgacgataacggttacctcgaggagagcctggaagatatccatgcgcgc
atgccggaagagctggagatcgagttcgacgaattgcgcaccgcgctgaagctgctgcag
agctttgatccggccggcatcggtgcgcgcaacgcttccgaatgcctggcgctgcagatc
cgccgcatgccgggcgtgccgctggtcacgcggcggatggcgctgtgcatcgttgaaaaa
cacttgcagtggtttgcgcagcgcgacttcaacaagctgaagaaggcactcgattgcgac
gatgaagacttgcgcgaagcgcaagcggtgattcggcagtgcaatccgcatccgggcgcc
gccttcgcggccgacgtgtcagactatgtcgtaccggatgtcgtggtgaggaaaggacgc
aatggctggatcgtcacgctcaacaatgacgtgatgccccgcctgcgcgtgaatgcgctg
tatgccagcctgctcaaacagggcaagggcgaaacgcagatgaatgcgcagctgcaagaa
gccaagtggctgatcaagaatatgcgccagcgctttgacacgatcctgcgcgtggcccag
gccatcgtcgagcggcaaaagaactttttctcgcatggcgcggtggcaatgagacccctt
gtgttgcgtgaaatagctgatacactgggtcttcacgagagtactatctctcgggtaaca
actcaaaaatatatgctcaccccgcatggcatgtttgagttgaagtatttttttggcagc
cacgtcgcaaccgaagctggtggggaagcttcctcgactgcgatccgggcgctgatcgtg
caattcacaggagccgaagacccgaagaaccctttatccgacagtaagattgcggacatg
ctgggtgaacaaggcatggtgattgcgcgacgcactgttgccaaatatcgcgaagcattg
aaaattcccccagtcagcctccgcaagtccttgtaa
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