Pseudoduganella lutea: EWM63_14575
Help
Entry
EWM63_14575 CDS
T10124
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
plue Pseudoduganella lutea
Brite
KEGG Orthology (KO) [BR:
plue00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
plue03016
]
EWM63_14575
Enzymes [BR:
plue01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
EWM63_14575
Transfer RNA biogenesis [BR:
plue03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
EWM63_14575
Prokaryotic type
tRNA splicing ligases
EWM63_14575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
QBE67280
UniProt:
A0A4P6L6H1
LinkDB
All DBs
Position
3443635..3444867
Genome browser
AA seq
410 aa
AA seq
DB search
MDSDYDTMDVKGGRPVKMWTHGVPVEPEAKEQLANTAKMPFIYKHIAVMPDVHLGKGSTI
GSVIPTLGAVIPAAVGVDIGCGMMAAKTTLAASDLPDNLGPLRSAIEKAIPHGLSPKTRG
FKGRDQGSWQDPPSAVDAAWMQLKDEFDVICAKTPKLRHTNNYKHLGTLGTGNHFIEVCL
DEEGAVWLMLHSGSRGVGNAIGTHFIELAQQDMRTHLANLPDRDLAYLKEGTQHYDDYVE
AVGWAQKFARMNREVMMQNLVKAVRTVIKKPFETHVEAVNCHHNYVQKERHFGQDVLVTR
KGAVSARAGELGIIPGSMGARSYIVRGKGNEESFTSCSHGAGRTMSRSEAKRRFTREDQA
RATQGVECRKDEGVVDEIPMAYKDIDAVMHAQRDLVEVVHTLKQVVCVKG
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atcgactcggactacgacaccatggacgtgaagggcggccgccccgtcaagatgtggacg
cacggcgtgccggtggagccagaggcaaaggagcagctggcgaacacggcgaagatgccc
tttatttacaagcacatcgccgtcatgcccgatgtccacctgggcaagggctcgacgatc
ggcagcgtcatccccacgctgggcgcggtcattcccgccgccgtgggcgtcgacatcggc
tgcggcatgatggctgccaagaccacgctggccgccagtgacctgccggacaacctgggc
ccgctgcgcagtgcgatcgaaaaggcgattccccacggcttgtcgccgaagacgcgcggc
ttcaagggccgcgaccagggctcgtggcaggacccgccctccgcggtggatgcagcatgg
atgcagttgaaggatgagttcgacgttatctgcgccaagacgcccaagctgcggcacacc
aacaactacaagcacctgggcacgctcggtaccggtaaccacttcattgaggtctgcctc
gacgaggagggcgccgtctggctgatgctgcactccggttcgcgcggcgtaggcaatgcg
atcggcacgcatttcatcgaactggcgcagcaggatatgcgcacccacctggccaacctg
cccgatcgcgacctggcctatctgaaggaaggcacgcagcattacgacgactacgtggaa
gccgtggggtgggcgcagaagtttgcccgcatgaaccgcgaggtgatgatgcagaacctg
gtcaaggctgttcgcactgtgatcaaaaagccgttcgagacgcacgtggaagccgtcaat
tgccatcacaactatgtgcagaaggaacggcacttcggccaggacgtgctggtgacgcgc
aagggcgcggtatcggccagggccggcgaactgggaatcatccccgggtcgatgggggcg
cgcagctacatcgtgcgcggcaagggcaacgaagaaagctttaccagttgcagccacggg
gctggccgtacgatgagccgcagcgaggcaaagcggcgtttcacgcgcgaagaccaggcg
cgcgccacacagggtgtcgagtgccgcaaggatgaaggcgtggtggatgagatcccgatg
gcctacaaggatatcgacgccgtgatgcacgcgcagcgcgacctggtcgaggtggtgcat
acgttgaagcaggttgtctgtgtaaaaggctga
DBGET
integrated database retrieval system
