Pseudoduganella lutea: EWM63_20730
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Entry
EWM63_20730 CDS
T10124
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
plue Pseudoduganella lutea
Brite
KEGG Orthology (KO) [BR:
plue00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
plue03009
]
EWM63_20730 (rlmD)
Enzymes [BR:
plue01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
EWM63_20730 (rlmD)
Ribosome biogenesis [BR:
plue03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
EWM63_20730 (rlmD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRM5-TYW2_MTfase
Methyltransf_31
Methyltransf_15
Methyltransf_25
Methyltransf_ANTKMT
MTS
RrnaAD
Cons_hypoth95
Methyltrans_SAM
UPF0020
TRAM
CMAS
Methyltransf_11
PDGF
Methyltransf_23
DOT1
Methyltr_RsmB-F
Methyltransf_32
PCMT
Motif
Other DBs
NCBI-ProteinID:
QBE65119
UniProt:
A0A4P6L0W5
LinkDB
All DBs
Position
4855514..4856857
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AA seq
447 aa
AA seq
DB search
MQDNSIEIKSLDMDARGVGHLQDNEDGTPGKVVFVEGALPGERVSFEMLRKKKNWESGRV
TAIHRESAMRVQPKCVHFDYCGGCSMQHLEETAQVAIKQRVLEDNLWHLSKVKADVMMRP
LQGPTWGYRYRARLSARHVAKKGTVLVGFHEKKSVYVADIQSCQILPKHVSDMMMPLRAL
IGSLSIFDKVPQLELAIGEDLTVLVMRNMVPLTADDEAKLKAFADEFNIQWWLQPKGPET
AYPFYPLDKQLHYLLPEFGIRMPFKPVDFTQVNHQINRVLVHKALRHLDVQPGERVADLF
CGIGNFTLPLATQAREVVGIEGSTSLTERAQQNAVVNGVGDKTTFYCRNLFEVTKDDLIA
LGKFDRILVDPPRDGAMALSLALAELKETNPELLPKRIVYVSCSPSTLARDAGVLVHRAG
YTLSQAGVMNMFPHTSHVESMAVFDLA
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgcaagacaacagcatcgaaatcaaatcgctcgacatggacgcgcgcggcgtcggtcac
ctgcaggataacgaagacggcacgccgggcaaggtggtgttcgtggaaggcgcgctgccg
ggcgagcgggtcagctttgaaatgctgcgcaagaaaaagaactgggaatcgggccgcgtg
acggcgatccaccgggaatcggccatgcgcgtgcagccgaaatgcgtgcatttcgattat
tgcggcggttgctcgatgcagcacctggaagagacggcgcaggtggcgatcaagcagcgc
gtgctggaagacaacctgtggcacctgtcgaaggtgaaggcggacgtgatgatgcgccct
ttgcagggcccgacgtggggctaccgctatcgtgcgcgcctgtcggcgcgccacgtggcg
aagaaggggaccgtgctggtcggcttccatgaaaagaaatcggtgtacgtggccgacatc
cagagctgccagatcctgccgaagcacgtgtcggacatgatgatgccgctgcgcgcgctg
atcggttcgctgtcgatcttcgacaaggtgccgcagctcgaactggcgatcggcgaagat
ttgaccgtgctggtgatgcgcaacatggtgccgttgacggcggacgacgaagcaaagctg
aaagccttcgccgacgaattcaatatccagtggtggctgcagccgaaaggcccggaaacc
gcgtatccgttctacccgctggacaagcagctgcattacctgctgccggaattcggcatc
cgcatgccgttcaaaccggtcgatttcacgcaggtgaaccaccagatcaaccgcgtgctg
gtgcacaaggcgctgcgccacctggacgtgcagccgggcgagcgcgtggccgacctgttc
tgcggtatcggcaacttcacgctgccgctggcgacccaggcgcgcgaagtggtgggcatc
gaaggcagcacctcgctgacggagcgggcgcagcagaatgccgtcgtcaatggcgtcggc
gacaagaccacgttctactgccgcaacctgtttgaagtgacgaaggatgacctgatcgca
ctgggcaaattcgaccgcatcctcgtcgacccgccgcgcgatggcgcgatggcgctgtcg
ctggcgctggcggagctgaaggaaaccaacccggagctgctgccgaagcggatcgtctac
gtgtcgtgcagcccgtccacgctggcgcgcgatgcgggcgtgctggtgcatcgcgcgggt
tacacgctgtcgcaggccggggtgatgaatatgttcccccatacgtcgcacgtcgagtcc
atggcggtgttcgatctcgcctga
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