Pseudoduganella lutea: EWM63_25345
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Entry
EWM63_25345 CDS
T10124
Name
(GenBank) polysaccharide lyase family 1 protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
plue Pseudoduganella lutea
Pathway
plue00040
Pentose and glucuronate interconversions
plue01100
Metabolic pathways
plue02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
plue00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
EWM63_25345
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
EWM63_25345
Enzymes [BR:
plue01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
EWM63_25345
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GFIT
Motif
Pfam:
Pectate_lyase_4
DUF5123
Motif
Other DBs
NCBI-ProteinID:
QBE65899
UniProt:
A0A4P6L385
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Position
5990391..5991995
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AA seq
534 aa
AA seq
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METRFTGFPRARRPAGTVFGMLAAALLMQGCGGEAGMDPATGPTAAAKAAGAEPRTLSQQ
AAAAPRGLAAAATGWASQGAGTTGGAGAPDSNVYVVRNWAELNAALANANSPTYAANPAA
AKLEPKIIRIAGTIYGTDLGNGQLADEAYYKSTNTTAAKWDFKLYLQSLDTAFMADLASR
VAQGDPEAIALRARISALSSARTTLRRLQKTQIQSIVPSNTTIVGVGRDARLVDGYFSIN
ATSNIIIRNLELQAPADLTPSWDGKGSWDSSFKAISVVTGRQLWIDHCTLTDREQAEEIV
TINGVTSRVNRFDGLIDIEDSSDYVTISYNVFKDHDKTNMVGGSGDQNGVKEREFNRLTF
HNNVWHNITQRAPRARFGRIHVYNNYYRGDTGAGDYRLAYFIGMGAESKILSESNAFEIT
GPNTGSYASKVVANLNGYQFKDVGSWINGVAASAEIDAAARAALESNWANVLAAASKSGF
TVGPYTNELGWTPTYSYRPGASFHAVKAHNLAMAGAGRMAIDGANPDVTSSFSQ
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atggagacacgatttacaggattcccgcgcgcgagacgaccagccggcacagtgttcggc
atgctggccgcggcactgctcatgcagggatgcggcggcgaggcaggcatggacccggcg
accgggccgacagctgccgcgaaggcggcgggcgccgagccgcgcaccctgtcacagcaa
gccgcggcagcgccacgggggcttgccgcggcagccaccggctgggcgtcgcagggcgcg
ggcaccacgggcggcgccggcgccccggacagcaatgtctacgtggtgcgcaactgggcc
gagctcaatgccgcgctggccaatgccaacagcccgacctacgccgccaatcccgccgcg
gccaagctggaaccgaagatcatccgcatcgccggcaccatctacggcaccgacctgggc
aacggccagctggccgacgaggcgtactacaagtcgaccaacacgacggccgcgaagtgg
gacttcaagctgtacctgcaaagcctggacacggccttcatggccgacctggcgagccgc
gtggcgcagggcgatccggaggcgattgccctgcgcgcgcgcatctcggcgctgagctcc
gcgcgcaccacgctgcgccggctgcaaaagacgcagatccagtccatcgtgccctccaat
acgacgatcgtcggcgtggggcgcgacgcccggctggtcgacggctatttctcgatcaac
gccaccagcaacatcatcatccgcaacctggaactgcaggcgccggcggatctcacgccg
agctgggatggcaagggcagctgggattccagcttcaaggcgatctcggtggtgacgggc
aggcagctgtggatcgaccattgcacgctgaccgaccgtgaacaggccgaggaaatcgtg
acgatcaatggcgtcacgtcgcgcgtcaaccgcttcgacgggctgatcgacatcgaggac
agcagcgactacgtcaccatctcgtacaacgtgttcaaggaccacgacaagacgaacatg
gtgggcggttcgggcgaccagaacggcgtgaaggaacgcgagttcaaccgcctgaccttc
cacaacaacgtgtggcacaacatcacgcagcgcgcgccgcgcgcccgcttcggccgcatc
cacgtctacaacaactactaccgcggcgacacgggcgcgggcgattatcgcctggcctac
ttcatcggcatgggcgcggaatcgaagatcctgtccgagtcgaacgcgttcgagatcacc
ggcccgaacacgggttcctacgcatcgaaggtggtggcgaacctgaatggctaccagttc
aaggacgtgggttcgtggatcaacggcgtggcggcttccgccgagatcgatgccgcggcg
cgggcggcactggaatcgaactgggccaacgtgcttgccgccgcctcgaaaagcggcttc
acggtcgggccttataccaatgagctgggctggacgcccacctacagctaccgcccgggc
gcatcgttccacgcggtcaaggcgcacaacctggccatggccggcgcgggcaggatggcg
atcgatggcgcgaaccccgacgtgacgtccagtttctcgcagtag
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