Pseudoduganella lutea: EWM63_29730
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Entry
EWM63_29730 CDS
T10124
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
plue Pseudoduganella lutea
Pathway
plue03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
plue00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EWM63_29730 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plue03400
]
EWM63_29730 (mfd)
Enzymes [BR:
plue01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EWM63_29730 (mfd)
DNA repair and recombination proteins [BR:
plue03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EWM63_29730 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Cas3-like_C_2
CTE_SPB4
AAA_30
ERCC3_RAD25_C
HemY_N
Motif
Other DBs
NCBI-ProteinID:
QBE66636
UniProt:
A0A4P6L4P7
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All DBs
Position
7032090..7035533
Genome browser
AA seq
1147 aa
AA seq
DB search
MPFDFTRALPKPGNRFALPALYGSADSYALAQAALQLKSQGRMLAIVVAQASDGQRLLDE
IPWFAPALRCHLLPDWETLPYDAFSPHQDLVSERLATLHEIRSGECDVMLVPATSALVRM
APPSFLAAYTFFFKKGESLDEAKLKAQLTLAGYTHVTQVMSPGEYSVRGGLIDLFPMGSA
LPYRLDLFGDTIETIRTFDADTQRSLYPVNEVRLLPGREFPMDEAARTTFRSRWRETFEG
DPSRAVVYKDIKSGIASAGIEYYLPLFFEDTSTLFDYLPEGAALALVGDIDGAIRRFWAD
TESRYKFLKADRERPILPPEAIFLRDEAFFTCAKQHARITIGKSLDGEPSELSAPIPNIA
VNRHQDDPLTNLRAYVLRPDLRVMICADSAGRRETLQQYFAEFDLHPALVDGFGGFLASH
DRIVLGVAPLQAGFELHAGDETLVFITETEIYAGSGRRVGKKKQEAVTQVESMVRDLSEL
KIGDPVVHINHGIGRYMGLVSMDLGEGETEFLHLEYAKDTKLYVPVSQLHVISRYSGGAP
EDAPLHALGSGQWDKAKRKAAEQVRDTAAELLNLYARRAARQGHAFEYSSHDYERFAESF
GFDETPDQAAAILNVIRDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVAILAP
TTLLAEQHAQTFADRFADWPVKIAEMSRFRTGKEIASAMKGMADGTLDIVIGTHKLLSSD
VNFTRLGLVIIDEEHRFGVRQKEALKSLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIA
TAPQKRLAIKTFVRSEDGSIIREAILRELKRGGQVYFLHNEVETIQNRLAQLVELVPEAR
IAVAHGQMHERDLEKVMRDFVAQRYNILLCTTIIETGIDVPTANTIIMHRADKFGLAQLH
QLRGRVGRSHHQAYAYLLVSDLQSLSKQAQRRLDAIQQMEELGSGFYLAMHDLEIRGAGE
VLGESQSGEMLEVGFQLYTDMLNEAVRALKAGKEPDLAAPLSTTTEINLHVPALLPADFC
GDVHERLSIYKRLANCTSQEAIDGLQEELIDRFGKLPEPTKALIETHRLRIAAKTVGIVK
IDAHGEAANLQFMPQPPIDPMRIITLIQKHKHIKLNGQDKLKITASMPDLAARVAQIKTA
IKQLTSA
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgcccttcgacttcacacgagcacttcccaaacccggcaaccgcttcgcgctgcccgcg
ctgtacggttccgccgattcctatgcgctggcacaggcggcgctgcaactgaagagccag
ggccgcatgctggccatcgtggtggcgcaggccagcgacggccagcggctgctggacgag
atcccgtggttcgcccccgccctgcgctgtcacctgctgccggactgggaaacgctgccg
tacgacgcgttctcgccgcaccaggacctggtttccgagcgcctggccacgctgcacgaa
atccgcagcggcgagtgcgacgtgatgctggtgccggcaacgtcggcgctcgtgcgcatg
gcgccgccatcgttcctggccgcctacacgttcttcttcaagaagggcgagtcgctcgac
gaggcgaagctgaaggcgcaactgacgctggccggctacacccacgtgacgcaggtgatg
tcgcctggcgaatactcggtgcgcggcggcctgatcgacctgttcccgatggggtccgcg
ctgccataccgcctcgacctgttcggcgataccatcgaaacgatccgcacgttcgacgcc
gacacgcagcgttcgctgtatccggtcaacgaggtgcggctgctgccgggccgcgaattc
ccgatggacgaggcggcgcgcaccacgttccgcagccgctggcgcgaaacgttcgaaggc
gatccttcgcgcgccgtcgtctacaaggacatcaagagcggcatcgcctcggccggcatc
gaatactacctgccgctgttcttcgaagatacttccacgctgttcgattacctgcccgaa
ggcgccgcgctggcgctcgtcggcgacatcgatggcgcgatccgccgcttctgggccgac
accgagagccgctacaaattcctgaaggcggaccgcgaacgcccgatcctgccgcccgag
gcgatcttcctgcgcgacgaggcgttcttcacgtgcgccaagcagcatgcccgcatcacg
atcggcaagagcctcgatggcgagccttccgaactatcggccccgatcccgaacatcgct
gtcaaccgccaccaggacgatccgctgacgaacctgcgcgcctacgtgctgcgcccggac
ctgcgcgtgatgatctgcgccgactcggcgggccgccgcgaaacgctgcagcagtacttc
gccgagttcgacctgcacccggccctcgtcgacggcttcggcggcttcctggcttcgcac
gaccgcatcgtgctgggcgtggcgccgctgcaggccggcttcgagctccatgctggcgac
gagaccctggtattcatcaccgaaaccgagatctatgccggctcgggccggcgcgtcggc
aagaaaaagcaggaagccgtcacgcaggtcgaatcgatggtgcgcgacctgtccgagctg
aagatcggcgacccggtggtgcacatcaaccacggcatcggccgctacatgggcctggtg
agcatggacctgggcgaaggcgagacggaattcctgcacctagaatacgccaaggacacg
aagctgtacgtgcccgtgtcgcagctgcacgtgatttcccgctactcgggcggtgcgccg
gaagatgcgccgctgcacgcgctgggctcgggccagtgggacaaggccaagcgcaaggca
gccgagcaggtgcgcgacacggccgccgagctgctgaacctgtatgcgcgccgcgccgcg
cggcagggccacgcattcgaatattcgtcgcacgactacgagcgtttcgccgagagcttc
ggcttcgatgaaacgcccgaccaggccgcggccatcctgaacgtgatccgcgacatgacg
tcgggcaagccgatggaccggctcgtgtgcggcgacgtgggcttcggcaagaccgaggtc
gcactgcgcgccgccttcatcgccgtcatgggcggcaagcaggtggcgatcctggcaccc
accacgctgctggccgaacagcacgcgcaaacgttcgccgaccgcttcgccgactggccc
gtgaagatcgcggaaatgtcgcgcttccgcaccggcaaggaaatcgccagcgccatgaaa
ggcatggccgacggcacgctcgatatcgtgatcggcacgcacaagctgctgtcgagcgac
gtgaacttcacgcgactgggtctcgtcatcatcgacgaggaacaccgcttcggcgtgcgc
cagaaggaagcattgaaatcgctgcgcgccgaagtggacgtgctgacattgaccgccacg
ccgatcccgcgcacgctgggcatggcgctcgaaggcctgcgcgacttttccgtgatcgcc
acggcgccgcagaagcgcctcgccatcaagaccttcgtgcgcagcgaggatggctcgatc
atccgcgaagcgatcctgcgcgaactcaagcgcggcggccaggtgtactttttgcacaac
gaggtggaaacgatccagaaccggctggcgcagctcgtcgagctggtgccggaggcgcgc
atcgccgtcgcccacggccagatgcacgagcgcgacctggaaaaggtgatgcgcgacttc
gtggcgcagcgctacaacatcctgctgtgcacgacgatcatcgagaccggcatcgacgtg
cccacggcgaacacgatcatcatgcaccgcgccgacaagttcggcctggcccagctgcac
cagctgcgcgggcgcgtgggccgctcgcaccaccaggcgtatgcctacctgctggtgagc
gacctgcaatcgctgtcgaagcaggcgcagcgccggctcgacgcgatccagcagatggaa
gaactgggcagcggcttctacctggccatgcacgacctggaaatccgcggcgcaggcgag
gtgttgggcgaaagccagtccggcgaaatgctcgaagtgggcttccagctgtacaccgac
atgctgaacgaagccgtgcgcgcgctgaaggccggcaaggagccggacctggcagcgccg
ctgtccaccaccaccgagatcaacctgcacgtgccggcgctgctgccggccgatttctgc
ggcgacgtgcacgagcgcctgtcgatctacaagcgcctggccaactgcacctcgcaggaa
gcgatcgacggcctgcaggaagaactgatcgaccgttttggcaaattgcccgaaccgacg
aaggcgctgatcgaaacgcaccggctgcggattgccgcaaagaccgtcggcattgttaaa
atcgatgcccatggtgaagcagcgaacctgcaattcatgccacaaccgcccatcgacccg
atgcgcatcatcaccctgatccagaagcacaagcacatcaagctgaacgggcaggacaaa
ctgaagatcaccgcgagcatgcccgacctggccgcacgcgtcgcgcagatcaagaccgcc
atcaaacaactgacttccgcgtga
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