Candidatus Phytoplasma luffae: LFWB_5260
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Entry
LFWB_5260 CDS
T07569
Symbol
srmB
Name
(GenBank) superfamily II DNA/RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pluf
Candidatus Phytoplasma luffae
Pathway
pluf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pluf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LFWB_5260 (srmB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pluf03019
]
LFWB_5260 (srmB)
03009 Ribosome biogenesis [BR:
pluf03009
]
LFWB_5260 (srmB)
Enzymes [BR:
pluf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LFWB_5260 (srmB)
Messenger RNA biogenesis [BR:
pluf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LFWB_5260 (srmB)
Ribosome biogenesis [BR:
pluf03009
]
Prokaryotic type
rRNA helicases
LFWB_5260 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
RDD1
Motif
Other DBs
NCBI-ProteinID:
QTX03092
UniProt:
A0A975FJU2
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All DBs
Position
552941..554632
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AA seq
563 aa
AA seq
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MSILFKDLNLSKQTEKVLSELKFEKPTPIQALVIPEIINGYDVIAQSQTGTGKTFSFGIP
IIENIDCKSSKIQSLILCPTRELASQVFLEIKKLLRFNFEIRTIVIYGGESYTKQFKELD
TKPHIVIATPGRTIDLLERKKIDLSSVKILTLDEADEMLKMGFQDDLERILSKVHSQRQT
ILFSATISPTIIQIASKYQKEPKILKVKQDTLAVKSIKQFYFIVKEFDKNKLLVRLLDYK
NPESVIIFANTKRDVDNIFNYLQEKGFLVDAIHGDLKQNQRKFVMNNFRQKNIKILVATD
VAARGIDISDIKMVINYELPYEDEVYIHRIGRTGRAGKTGTAYSFISIKKMGQFKRLEKY
LKEKVTYLNIPSVEDITKEQNKFWKDKIFNLINENKDKNEPLHPLVDVLLDKIDHKIIIS
TFINHFALMNKKYEPIIEPKVLQRNLNTRYNRFDNKNTNNYNNTFNKYNNKNYNNNTFNK
YNDNYNSQNMSEFIINLGKSDGINPSLLLRLLKDKFNIYGKNIGNIKHFYDRTVFEIVDS
FINKLLLPKNVYYENKLLKIEPK
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgagtattttatttaaagatttaaatttatcaaaacaaactgaaaaagttttgtcagaa
ttaaagtttgaaaaaccaactccgatccaagctttagttattccagaaattattaacggt
tatgatgttatagctcaatctcaaacagggacaggtaaaactttttcttttgggattcct
attatcgaaaatatagattgtaaatcttccaaaatacaatctttaattttgtgcccaaca
agagaattagcttcacaagtttttttagaaattaaaaaattattaagatttaattttgaa
atcagaacaatagttatttatggcggcgaatcttatactaaacaatttaaagaattagat
actaaacctcatattgttattgctacacctggaagaacaatagatttattggaaagaaaa
aaaatagatctatcatcggttaaaattttaactttagatgaagctgatgaaatgttaaag
atgggttttcaagatgacttagagagaattttatccaaagttcattcacaaagacaaaca
attttattttctgctacaatttctcctactattattcaaattgcttcaaaatatcaaaaa
gaacctaaaattttaaaagtaaaacaagatactctcgctgtaaaatcaattaaacaattt
tattttattgttaaagaatttgataaaaataaacttttagtacgtcttttagattataag
aacccagaatctgttattatttttgccaatactaaaagagatgtagataatatttttaat
tatttacaagaaaaaggttttttagtagatgctattcatggagatttaaaacaaaatcaa
agaaaattcgtcatgaataattttagacaaaaaaatattaaaattttagtcgctactgat
gttgccgctagaggaatagatatttcagatattaaaatggttattaattatgaattgcct
tacgaagatgaagtttatatccatagaataggtagaacaggaagagcgggaaaaacagga
acagcttatagttttatcagtataaaaaaaatgggccaatttaaaagattagaaaaatat
ttaaaagaaaaagtaacttatttaaatattccttctgttgaagacatcacaaaagaacaa
aataaattttggaaagataaaatttttaatttaattaatgaaaataaagataaaaatgaa
cctttgcatcctttagttgatgttttattagataaaatagatcataaaataattatttct
acttttataaatcatttcgctcttatgaataaaaaatacgaacctattattgaaccgaaa
gttttacagagaaatctaaatactcgttataatagattcgataacaaaaatacgaataat
tataataatacttttaataaatataataataaaaattacaataataatacttttaataaa
tataatgataattataattctcaaaatatgtcagaatttattatcaatttaggaaaatca
gatggcatcaatccttctttattgttaaggttattaaaggataaatttaacatttatggt
aaaaatatcggcaatataaaacatttttatgatagaactgtttttgaaatagttgatagt
tttattaataaattattattaccaaaaaatgtttattacgaaaataaacttttaaaaatt
gaacctaaataa
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