Candidatus Phytoplasma luffae: LFWB_6560
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Entry
LFWB_6560 CDS
T07569
Symbol
srmB
Name
(GenBank) superfamily II DNA/RNA helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
pluf
Candidatus Phytoplasma luffae
Brite
KEGG Orthology (KO) [BR:
pluf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pluf03019
]
LFWB_6560 (srmB)
03009 Ribosome biogenesis [BR:
pluf03009
]
LFWB_6560 (srmB)
Enzymes [BR:
pluf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LFWB_6560 (srmB)
Messenger RNA biogenesis [BR:
pluf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LFWB_6560 (srmB)
Ribosome biogenesis [BR:
pluf03009
]
Prokaryotic type
rRNA helicases
LFWB_6560 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
PhoH
Motif
Other DBs
NCBI-ProteinID:
QTX03217
UniProt:
A0A975IM75
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All DBs
Position
complement(676376..677620)
Genome browser
AA seq
414 aa
AA seq
DB search
MTNYIKNKLKQLKFETITPIQEELFNNFQKPLNIVGISPTGTGKTHAYLLPILSEIDWRQ
NKTQAIIIAPNNELIFQIFQMIKQIEQRSSQVKILYGGMDKQKTIKNLEKKQSPLIITTL
NKLFEYYTVFKTIKFAKSSFLVLDEADMLFEQSSLSLLDVLLTSWKPKILLFSASITSNM
NPFINKYFGKSLFLNTNDKQKLNLKYYTLLSYQEKRLNDLKHLMKNLNPYSALIFVSKKE
EQSKIYNFLKTFNFNILNFSSDLKIQKRKYFFNEIKKMKYQYILTSDLMARGLDLDIEWV
IHYDLPKKNLEFFQHRSGRTGRMGKEGKVLIFYDEKEQKSLQKIKQQHNIVFQNIVLTEN
GFREQTIKTKTTKNFKKFLPTKTKNKKNVKNFSTTNQNLKKNKKINTKRKKNYE
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgacaaattatatcaaaaacaaactaaaacaattaaaatttgaaaccattactcctatt
caagaagaattatttaataattttcaaaaacctttaaatatagtaggtatttcgccaaca
gggacaggaaaaacacatgcttatttattacctattttaagcgaaattgattggcgacaa
aataaaactcaagctattattatcgctcctaataatgaattaatttttcaaattttccaa
atgataaaacaaatagaacaaagaagttctcaagtaaaaattctatatggcggtatggat
aaacaaaaaacaataaaaaatttagaaaaaaaacaatctcctttaatcataaccacttta
aataaattatttgaatattatactgtttttaaaacaattaaattcgctaaatcttctttt
ttagttttagatgaagcagatatgttgttcgagcaaagttcattatctttattagatgtt
ttattaacaagttggaaacctaaaattttattattctctgcttctatcactagtaacatg
aacccttttattaacaaatattttggaaaatctctatttttaaatactaatgataaacaa
aaattaaatttaaaatattacactttgttaagttatcaagaaaaacgtttgaatgattta
aaacatttaatgaaaaatttaaatccttattcagccttaatttttgtatcaaaaaaagaa
gaacaatctaaaatatataattttttaaaaacatttaattttaatattttaaatttttct
tctgatttaaaaatacaaaaaagaaaatatttcttcaatgaaataaaaaaaatgaaatat
caatatattttaactagtgatttgatggcgagaggtttagatttagatattgaatgggtt
attcactatgatttgcctaaaaaaaacttagaattttttcaacacagaagtggtagaacg
ggaagaatgggaaaagaaggaaaagttttaattttttacgatgaaaaagaacaaaaatct
ttacaaaaaattaaacaacaacataatattgtttttcaaaatatagttttaaccgaaaat
ggtttccgtgaacaaacaataaaaacaaaaactacaaaaaatttcaaaaaatttttacct
acaaaaacaaaaaataaaaaaaatgtcaaaaatttttcaactactaatcaaaatttaaaa
aaaaataaaaaaattaatactaaaagaaaaaaaaattatgaataa
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