Photorhabdus luminescens: CE143_11070
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Entry
CE143_11070 CDS
T08000
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
plui
Photorhabdus luminescens
Brite
KEGG Orthology (KO) [BR:
plui00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plui03019
]
CE143_11070
Enzymes [BR:
plui01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CE143_11070
Messenger RNA biogenesis [BR:
plui03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CE143_11070
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
nSTAND3
AAA_22
WHD_HA2
NACHT
PhoH
ResIII
nSTAND_NTPase5
T2SSE
SLFN-g3_helicase
AAA_30
TsaE
NTPase_1
AAA_23
Motif
Other DBs
NCBI-ProteinID:
UJD75435
LinkDB
All DBs
Position
2512534..2516292
Genome browser
AA seq
1252 aa
AA seq
DB search
MKESQKIINRQAACPTIKYPENLPVSQKKDDIYKAIRDHQVVIIAGETGSGKTTQIPKIC
LELGRGIKGLIGHTQPRRLAARAVANRLAEELETSVGSAVGYKVRFSDHVGDNTLVKLMT
DGILLAELQNDRLLKQYDTLIIDEAHERSLNIDFILGYLRQLLPKRPDLKVIITSATIDP
ERFSRHFNHAPIIEVSGRTYPVEVRYRPVMGEDNDGERDQLEAIIDAVDELNREGPGDIL
IFMSGEREIRDTADALNKLNLRHTEVLPLFARLSNSDQNRIFQSHTGRKIVLATNVAETS
LTVPGIKYVIDTGYARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSDGICIRLYSE
DDFLSRPEFTDPEILRTNLASVILQMTAIGLGDVSAFPFVQPPDKRNIQDGVRLLEELGA
IDQSTINQGAMAKSNYRLTLIGRQLAQLPVDPRLARMVLEARHHGCVREVMVITSALSIQ
DPRERPLEKQQASDEKHRRFADKDSDFIAFLKLWDFLKEQQKELSSSQFRKLCRQDYLNY
LRVREWQDIYAQLRQVVKEIGLSINSQDADYRSIHTALLSGLLSHIGQKDTDKQEYTGAR
NARFAIFPGSGLFKKPPKWSMAAELVETSRLWGRIAARIEPEWVEPLAAHLVKYHYSEPH
WQKSQGAVMAKEKVTLYGLPIVANRQVNYSKIDPMLCRELFIRHALVEGDWQTRHAFFRA
NLKLREEIEELEHKSRRRDILVDDETLFSFYDRRIPQNVVSARHFDRWWMKTGKEQPDLL
NFEKNMLIKGDADKISALDYPNYWCQDALKLRLSYQFEPGTQADGVTVHIPLPVLNQVKD
EGFDWQIPGIRYDLVVALIKSLPKPVRRNFVPAPNYAQAFMERVSQPQSTLLDSLERELR
RITGVTVSRDDWQLEQVPDHLKMTFRVVGEKNRTIAEGKDLSALKLRLKEKVQETLSSVA
DDGIEQSGLHIWSFGELPGRYEQKRGGYSVKAFPALVDEKESIGIKLFETELEQQIAMWE
GTRRLLLLNIPSPIKYLHEKLPNKSKLGLYFNPYGKVLDLIDDCISCGVDKLMAVNGGPA
WNEQDFIQLQDKVRAELNDTVVEIAKQVEQILTTIFAINKRLKGRIDISLALALSDIKEQ
LSGLVFKGFVTVNGWKRLPDVLRYLQGIERRLEKLAIDPHRDRAQMGRVENVQQQWQQWL
AKLSLQQKQLPEVQEIRWMIEELRISLFAQQLGTPYPVSDKRILQTMEQIAS
NT seq
3759 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagagtctcagaaaatcattaaccgtcaggctgcttgtccaacgatcaaatatcca
gaaaacttgcccgtcagccagaagaaagatgatatctacaaagctattcgtgaccatcaa
gttgtcattattgcgggtgaaaccggttcgggtaaaacaacccaaatcccgaaaatttgt
cttgaactaggtcggggaataaaaggtctgatcggccatactcaaccccgtcgattggct
gctcgcgcggttgccaatcgtttggcggaagaattggaaacctcggtgggttctgctgtc
ggttataaagtccggtttagtgatcatgtgggcgataacacgttggttaagctgatgacc
gatggtattttgctggcggaattgcaaaatgacaggttgcttaaacaatatgacacgctc
attatcgatgaggcgcatgagcgtagtctgaatattgattttattctgggttatttgcgt
cagttgctgccaaaacgtcctgatttgaaagtgattattacctcggcgactatcgatcct
gagcgtttttcccgtcattttaatcatgcgccaattattgaagtttctggtcgaacctat
ccggtagaagtgcggtatcgtccggtgatgggggaagataatgatggcgagcgggatcag
cttgaggcaattattgatgctgttgatgaactcaaccgggaagggcctggggatatcctg
atctttatgagtggtgagagggagattcgcgatacagccgatgcgctgaataaactgaat
ctgcgtcataccgaagtactgccgctatttgcgcgtctttctaacagtgatcagaaccgg
attttccagtcacatacggggcggaaaattgtgctggcaactaacgtggcagaaacttcg
ttgactgtaccgggaattaaatatgtgattgataccggatatgcacgtatcagccgttac
agttatcggacgaaagtacagagattgccgattgagccaatatcacaggcgtcggctaat
cagcggaaagggcgttgcggacgtgtatccgatgggatctgtatccggctgtattcagaa
gatgatttcctttctcggccggagtttactgatccagaaatcctgcgtactaacttggca
tcggtcattctacaaatgacggcaattggtcttggggatgtcagcgcatttccatttgtg
caaccgcctgataaacgtaatattcaggatggcgttcggcttctggaagaacttggggct
attgatcagagcaccattaatcaaggcgcaatggctaagagtaattaccgtcttacatta
atcggacgacagcttgctcaactcccggttgatccccggttggcgcgtatggtattggag
gctcgtcatcatggttgtgtgcgtgaagtgatggtcatcacttctgcgctgtctattcag
gacccaagggagcggccgctagagaaacaacaggcttctgatgagaaacaccgtagattt
gctgataaagactccgattttattgcatttctgaaattatgggattttttgaaagaacag
caaaaggaactttcttcttcgcaatttcgcaagctttgccgtcaagattatcttaactac
ctgagggtcagagagtggcaggatatatacgctcagttacgacaagttgtgaaagaaatt
ggtttgtcgataaatagccaggatgcagattaccgcagtattcatactgcgttactttct
gggctgttatcccatattggccaaaaagatacagacaaacaggaatataccggtgcgcgt
aatgctcgttttgctatttttcctggttctggtttattcaagaaaccgcctaaatggtca
atggcggcggaattggttgaaactagccgcttgtgggggcgtattgctgcgcggatagaa
cctgaatgggttgaaccattagccgcacatctggtgaagtatcattatagcgaaccgcac
tggcaaaaatctcagggcgcggtaatggctaaggaaaaagtcactttatatggtttgcca
attgtggctaatcgtcaggttaattacagcaaaattgatccaatgctctgccgtgagttg
tttatccgccatgcgctggtggaaggcgactggcaaactcgacatgcatttttccgagcg
aatctgaaattacgcgaggaaattgaggagttggaacataaatcccgtcgtcgtgacatt
ttggtggatgatgaaactctatttagcttctatgatcgacggatacctcagaatgtagtt
tctgcccgccattttgatcgctggtggatgaaaacaggtaaagagcaaccggacttgctc
aactttgaaaaaaatatgttgatcaaaggtgatgccgataaaatcagtgcgttggattac
cctaattactggtgtcaggatgcactgaaattacggcttagttaccagtttgaaccaggt
acgcaagccgatggtgtgaccgttcatattccgctgccggtgctgaatcaggttaaggat
gaaggatttgattggcagatcccaggtattcgctatgatttagtggttgcgctgattaaa
tcactgccaaagccggttcgtcgtaattttgtacctgcgccaaactatgctcaggcattt
atggagcgagtatctcaacctcaatccactttgttagatagtcttgagagggagttacgg
cggataactggcgttacggtgtcacgtgatgattggcagttagagcaagtacccgatcat
ctcaaaatgacattccgagtggtaggagagaagaatcgaactatcgctgagggtaaagat
ttatctgcactgaaattacgcttgaaagagaaagttcaggagacactttcctctgttgct
gatgatggaattgaacagagtgggctacatatctggagttttggtgaattaccgggacga
tatgagcaaaaacgcggtggttactctgttaaagcatttcctgcgctggtggatgaaaaa
gagagtatcggtatcaaattgtttgaaactgaattagagcaacagattgccatgtgggaa
ggtactcgccgtctgttattgctcaatattccttcgccaattaaatacttacatgagaaa
ttgccgaataaatccaaactgggactctattttaatccctatggcaaggtactggatctg
attgatgattgtatctcctgtggtgtggataaattaatggcagtgaatggtggaccagct
tggaatgagcaggattttattcagctacaggacaaagttcgggctgagttgaacgatact
gtcgtggaaatagctaaacaggtagaacagatactcaccactatttttgctattaacaaa
cgccttaaggggagaattgatatttcactagccctggcgttatcggatatcaaagagcag
ctttctggtctggttttcaaaggatttgtcaccgttaatggttggaaacgtttgccggat
gtcctgcgttatctacaaggtattgagcgccgtcttgaaaaattagcgattgatccgcac
agagatagagcacaaatggggcgtgtcgaaaatgtccagcaacagtggcagcaatggctg
gcaaaattatcactgcaacaaaagcagttgcctgaggtacaagagattcgttggatgatt
gaagaactgcggatcagcttgtttgctcagcaactgggtacgccatatccggtctcggat
aagagaattttgcaaacaatggagcaaattgcttcctga
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