Photorhabdus luminescens: CE143_12230
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Entry
CE143_12230 CDS
T08000
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
plui
Photorhabdus luminescens
Brite
KEGG Orthology (KO) [BR:
plui00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
plui03016
]
CE143_12230
Enzymes [BR:
plui01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CE143_12230
Transfer RNA biogenesis [BR:
plui03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CE143_12230
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
ODP
Motif
Other DBs
NCBI-ProteinID:
UJD78076
LinkDB
All DBs
Position
2783440..2785383
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AA seq
647 aa
AA seq
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MFQNNPLLAQLKQQLHSQTLRVEGLVKGTEKGFGFLEVDGQKSYFIPPPHMKKVMHGDRV
TAAIHTDKEREIAEPETLVEPFLNRFVGRIQKKENDNRLWIVPDHPLLKDAIPCRPANQV
THPFQHGDWAVAEMRHHPLKGSRGFHAEITGYITESSDHYAPWWVTLTRHNLERDAPTMT
ADCQMNDGDLERIDLTSLDFVTIDSATTEDMDDALHIVKQDDGSLKLSIAIADPTAYIAA
NSELDQIAHQRAFTNYLPGFNIPMLPRDLSENLCSLRPNARRPALVCQVSILEDGQLGDD
IAFFSTWVESKAKLVYDEVSDWLEETGTWKPSSEAIGTQITLLKEMSDRRNQWRHQNALI
FKDRPDYRFILDDNGYVLDIVVEQRRTANRIVEEAMITSNLCAAKILRDKLGFGIYNVHM
GFEPLQIEQVVELLQENGIDANTEELLTLNGFCKLRRELDKQPTQFLDSRIRRFQTFAEI
KPEPGPHFGLGFEAYATWTSPIRKYSDMINHRLLKAIIQKTDVEQPSEETCLQLAERRRL
NRMAERDVGDWLYARFLHSHAGTEQRFTAEIIDITRGGLRVRLVDNGAVAFIPAPFLHAV
RDELQCSQETGTVIIKGETAYQLNDIIDVRIEEVRMETRNIVARPAV
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaaaacaacccgctgcttgcacagctaaaacagcaacttcattcccaaacactt
cgagtagaaggtttggtcaaaggtaccgaaaaaggattcggattcttagaagtcgatggg
caaaaaagctatttcattccccccccacacatgaaaaaagttatgcatggcgatcgagta
actgccgctattcatactgataaagaaagagagatcgccgaaccagaaacattggtcgaa
ccatttctaaatcgcttcgttggccgtatccagaaaaaagaaaacgataaccgtttatgg
atcgttcctgatcacccactgttaaaagatgctatcccttgtcggccagccaatcaggtc
acacatccatttcagcatggtgattgggccgtcgctgaaatgcgccatcacccactgaaa
ggcagccgtgggtttcatgcggaaattaccggctatattactgagagtagcgatcactac
gccccttggtgggtaacactaactcgccataatctggaacgtgatgctcccaccatgact
gccgattgccaaatgaacgatggtgatcttgagcgcattgacttaacgtcactggatttt
gtcactatcgacagtgcaaccacggaagacatggacgatgctttgcatatcgttaagcaa
gatgatggcagcctgaaactcagtatcgccatcgctgatccaaccgcttatatcgcggct
aacagcgaactggatcaaatcgcccatcaacgtgctttcactaactacctgccgggtttt
aacattcctatgctgccgcgcgacctgtcagaaaatttatgctctctgcgccctaacgcc
cgccgcccggcattggtttgtcaggtttccattctggaagatggtcaactgggtgatgat
attgcgtttttctctacctgggttgaatcaaaagctaaactggtttacgacgaagtttcc
gactggctggaagaaacaggaacctggaaaccttcttctgaggcaattggaactcaaatc
actctcctgaaagaaatgagtgatcgccgtaaccaatggcgccaccaaaacgcgcttatt
ttcaaagatcgtcctgactaccgcttcatccttgacgataatggttatgtactggatatc
gtggtagaacaacgccgtacagccaaccgtattgttgaagaagcgatgatcacttctaac
ctgtgcgccgcaaaaatcctgcgcgataaattaggttttggtatttacaatgtccatatg
ggttttgagccgctgcaaattgaacaagtggttgaattactgcaagaaaatggtatagat
gccaatacagaagagttgttgaccttaaacggcttctgcaaattacgccgtgaattggat
aaacaaccaacacaattccttgatagtcgcattcgtcgtttccagactttcgcagaaatt
aaacctgaacccggtcctcattttggtctcggttttgaggcttacgccacctggacatca
ccgatccgtaaatacagcgatatgattaaccatcgcttactaaaagcgattattcaaaaa
acggatgtggaacaaccctcagaagaaacctgtttgcaactggccgaacgtcgcagattg
aatcgtatggccgaacgtgatgtaggagattggctatacgcacgcttcctgcactcccat
gcaggaacagagcaacgctttactgcggaaatcattgatattacccgtggcggtttacgt
gttcgcttggtcgataacggcgccgtagcctttataccggcgccattcctgcatgcggtg
cgtgatgaactgcaatgtagccaagagaccggcacagtgattatcaaaggtgaaaccgct
taccaattgaacgacattattgatgttcgtattgaggaagtcagaatggaaacgcgtaat
attgtcgcccgccctgcggtctga
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